Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8957g00001 ATGCTCAACTCATTATCTCTTGTTGTTCAACAAGCTTGTAGAAGCTTGCATTTGCATGTGGTCATGGATGATACTGACAATGCTAATCATCATGATCATGACCAAGATCAATTCACCTTCCCAACAACAACAACAAATAATTACATGCCTTCTTCTGCTTCTGATGCTGCTACTGCATCACTGTCACAAGTTGATGCAACATCAGGTTGCTCAACAAAAGACACAACATCATCATCATGTTCTTGGATTGCACACATGATGGAGGCACAACACAAAGGAAAAGGCGTGTCGGTGTCTTTGGAATATCTTCAAGAGCCTAAAGAAGAGTTCAAAGTCACAACATGCAATTGGGACAGAGAGAGGGAGGGCAATTCTGTCTTTTCAGAATTCGGCCAAGTCCTGCAGCATGACCAGAGCAGTAATTCAAGAGCAAGTGTTGAAGCTGGGGAAGAATCTGGTGGCTGCGGTGTTGGTGGTGGTCGTCGGTCATCTTCTTCNNNNNNNNNNANNNNNNNNNNAGATAAGCGAAGAACCAAGGCGGAGAAGACTATTAGCTTGCCGGTTCTGAGACAATACTTTGCCGGAAGTCTAAAAGACGCCGCAAAGAGCATCGGTGTATGTCCTACCACTCTGAAAAGGATATGCAGACAGCATGGGATTACAAGATGGCCTTCAAGGAAAATAAAGAAAGTGGGCCACTCTTTGAAGAAGCTTCAACTGGTGATTGATTCCGTTCAAGGCGCCGAGGGCGCGATACAGATTGGCTCTTTCTATGCAAGCTTTCCAGAGTTGAGCACTGCAACTGCTAATGGTGGTGGTGATCATAACAACGTTAACAACAGCTTCTATAACAGCCATGGAGATGGAGTAGTTACTGGTTTGAAATCTCCACCCTCTGCTTGCAGTCAGACACANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNCATCATGTTATGATGACAGAAAACCCTGCAGCTCCTTCAGCAGCTGATGCATTAATGATGCATGGTTCCAATATCAATATTCAAAACTACCAGCAATTGCAAGAGGATCAGGATACTAAACAATTACTGCTACATTTCAACAACAATAACAACCAAACCCTACCTCCAAGGCCAACTGCAGGAGCCTGGAACAATAACAACAATAATTCATCTTCATCAGGACTACTGGAAAGGGGTGCTTTCAGAGTGAAGGCGACATTCGCGGATGAAAAGATTCGGTTTAGTTTGCAAGCAATGTGGGGTTTTAGANNNNNNNNNNANNNNATTGCAAGGCGTTTCAACCTAAATGATATGAATAATTTGGTTCTAAAGTATTTGGATGATGAAGGTGAATGGGTTGTATTATCATGTGATGCTGATCTTGAAGAATGTAAAGACTTGCACACATCGTCTCACACACGTACCATTAGACTCTCACTATTTCAAGCTTCGCCTCTCAATCTACCAAACAACTTCGTCCGCAACAGCAGCAGCAGTCCATCCTCCTAG 1524 0.4081 MLNSLSLVVQQACRSLHLHVVMDDTDNANHHDHDQDQFTFPTTTTNNYMPSSASDAATASLSQVDATSGCSTKDTTSSSCSWIAHMMEAQHKGKGVSVSLEYLQEPKEEFKVTTCNWDREREGNSVFSEFGQVLQHDQSSNSRASVEAGEESGGCGVGGGRRSSSSXXXXXXXDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYASFPELSTATANGGGDHNNVNNSFYNSHGDGVVTGLKSPPSACSQTXXXXXXXXXXXXXXXXXXXXXHHVMMTENPAAPSAADALMMHGSNINIQNYQQLQEDQDTKQLLLHFNNNNNQTLPPRPTAGAWNNNNNNSSSSGLLERGAFRVKATFADEKIRFSLQAMWGFRXXXXXIARRFNLNDMNNLVLKYLDDEGEWVVLSCDADLEECKDLHTSSHTRTIRLSLFQASPLNLPNNFVRNSSSSPSS 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8957g00001 507 CDD PB1_NLP 406 487 IPR034891 -
Trme8957g00001 507 ProSiteProfiles RWP-RK domain profile. 170 251 IPR003035 -
Trme8957g00001 507 PANTHER PROTEIN NLP8 1 498 IPR045012 GO:0003700
Trme8957g00001 507 MobiDBLite consensus disorder prediction 372 394 - -
Trme8957g00001 507 Pfam RWP-RK domain 184 231 IPR003035 -
Trme8957g00001 507 MobiDBLite consensus disorder prediction 27 52 - -
Trme8957g00001 507 SUPERFAMILY CAD & PB1 domains 394 490 - -
Trme8957g00001 507 SMART PB1_new 405 488 IPR000270 GO:0005515
Trme8957g00001 507 MobiDBLite consensus disorder prediction 38 52 - -
Trme8957g00001 507 Pfam PB1 domain 406 487 IPR000270 GO:0005515
Trme8957g00001 507 ProSiteProfiles PB1 domain profile. 405 488 IPR000270 GO:0005515
Trme8957g00001 507 Gene3D - 404 490 - -
Trme8957g00001 507 MobiDBLite consensus disorder prediction 138 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8957g00001 Trme-Chr8957 61 1727 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8957g00001 81 497 NLP Transcription Factor Family AT2G17150 42.353 3.14e-89 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trme8957g00001 PB1 2e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8957g00001 - - tpra:123881749 783.482