Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme895665g00001 ATGTATTTTATGGGACCATCAGAGACTTTTGTTGCGTGCAAGCTTTTGATCATGGAAGGCCACAAGACTTCTGTGAAGTTTGACTCTGGGTGGAAGAAGTTTTGTGCTGCTAGTGGCTACAAAGTTGGTGATGTGTTGACCTTTGAATTCAAAGATGCAAAGGGATCTACAATTATCTTTGTGACCAA 188 0.4096 MYFMGPSETFVACKLLIMEGHKTSVKFDSGWKKFCAASGYKVGDVLTFEFKDAKGSTIIFVT 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme895665g00001 62 Gene3D - 1 62 IPR015300 -
Trme895665g00001 62 ProSiteProfiles B3 DNA-binding domain profile. 1 62 IPR003340 GO:0003677
Trme895665g00001 62 Pfam B3 DNA binding domain 17 56 IPR003340 GO:0003677
Trme895665g00001 62 SUPERFAMILY DNA-binding pseudobarrel domain 4 55 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme895665g00001 Trme-Chr895665 16 203 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme895665g00001 B3 6.7e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme895665g00001 - - vun:114168889 42.743