Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme89520g00001 GAATTACCATCTCAGACTCAGAGTCCAAATGAGTTAATTTTGCGGGCTCTTAGAGATTTTATTTCTGAAAGGCATGGCGTACTGGAGGATGGTTGGCGAGTGGAACTTAGACCATCAATGATCAGCTCTGATCTGTATGCAATTTATTGTGCACCCGATGGAAAGATATTTGATTCCGTGTATGAAGTAGCTAATTATCTGGGGCTACCGTCTGGCTACAATTCTATGGAATCGGAAACAAGAAATGAAATGTCTCTTTCTCTAGGTGGGCCTCACCTATCCAGAAAAAGGAAGTCTTCTAGGACTCTGGCAGCCAATGGTTTTGCGGAAAAGCAGGGAACCTTGGTCAATAGTAATTATAAGGATTGTTCTTATGATTTAAGTATGGAATGTGATAATGCTCAGGGGACTGTCCCAAAAGCGACTGAGATTGGAAGAAAAGAGAATGGTCACTCCGACCCTCATCAATCCGCTGATGGACTTCCTGTGCAGTTTAAGGACTTCTATGTTCTTTCTTTGGGAAAAGTTGATGGGAGACCTTCATATTATGATGTTAACCTTATCTTTCCT 570 0.4175 ELPSQTQSPNELILRALRDFISERHGVLEDGWRVELRPSMISSDLYAIYCAPDGKIFDSVYEVANYLGLPSGYNSMESETRNEMSLSLGGPHLSRKRKSSRTLAANGFAEKQGTLVNSNYKDCSYDLSMECDNAQGTVPKATEIGRKENGHSDPHQSADGLPVQFKDFYVLSLGKVDGRPSYYDVNLIFP 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme89520g00001 190 Pfam Methyl-CpG binding domain 19 71 IPR001739 GO:0003677
Trme89520g00001 190 PANTHER OS02G0192300 PROTEIN 4 190 - -
Trme89520g00001 190 Gene3D - 4 113 - -
Trme89520g00001 190 SUPERFAMILY DNA-binding domain 19 69 IPR016177 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme89520g00001 9 190 C2H2 Transcription Factor Family AT3G01460 43.523 2.39e-42 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme89520g00001 K22768 - gmx:100820223 248.825