Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8937g00001 AATGAACAAAATGATAAAGAAATTACTAATGAGATGGAAGCCACTACTGCTGCCTATTACGTTTTCAGGAATGTTGCTGCTTCCGCTAGTTGCAAGGACATCGATGAGGCTGAACTCGGTAGATTCCTGATTAAGGAAGAAGTTCCTTTGTTAAAGGTATATCAAGAACGTAAAGCACTGGCACACACATTAAGTGGCACTAAAACAGCTGTTAAACAATTAAACAAGCTTGTGACAGTGGTTTTAGTAGTGGTGACCATAGTAGTGTGGCTTCTTCTAATGGAGATTGCAACAACAAAAGTACTTGTATTCCTCTCATCACAGCTAGTACTTGCGGCTTTCATGTTTGGAAACACGTGCAAGAATATATTTGAAGCCATCATCTTCGTGTTTGTAATGCATCCATTCGATGTTGGTGATCGGTGTGTTATAGATGGCATTGAGCTATTGGTTGAAGAAATGAATATATTGACGACAGTATTCTTGAAACTTAATAATGAAAAGGTGTAA 510 0.3804 NEQNDKEITNEMEATTAAYYVFRNVAASASCKDIDEAELGRFLIKEEVPLLKVYQERKALAHTLSGTKTAVKQLNKLVTVVLVVVTIVVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGIELLVEEMNILTTVFLKLNNEKV 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8937g00001 169 Pfam Mechanosensitive ion channel 75 167 IPR006685 GO:0016020|GO:0055085
Trme8937g00001 169 SUPERFAMILY Sm-like ribonucleoproteins 124 167 IPR010920 -
Trme8937g00001 169 Gene3D - 135 169 IPR023408 -
Trme8937g00001 169 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 3 169 IPR016688 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8937g00001 2 169 Mechanosensitive Ion Channel Family AT5G12080 62.304 4.72e-73 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8937g00001 K22048 - gmx:100803107 250.751