Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme89346g00001 ATGGCATCATCTTCGGCAGGGTCGTCGGTTGTTGGGGTCATTGATGGGAAATTTGATAGTGGTTATCTAGTTACTGTCACAATTGGTTCGGAGAAACTCAAAGGNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNCACCACAGTGCTTCTGCTAGTAACAACAATGTGACTGCCTCAGTTGGTGTCCATCGTCGCCGACGCAGGAAGAAGTCAGAAATGAAAAAGAGAGATCCTGCTCACCCAAAGCCAAACAGAAGTGGATACAATTTTTTCTTTGCAGAACAGCATGCAAGGCTAAAACCTCTTAACCAAGGGAGGGACAGAGAGATCAGTAGGACCATTGGTGAACTCTGGAACAAGTTAAACGACTCCGAAAAAGCA 393 0.4071 MASSSAGSSVVGVIDGKFDSGYLVTVTIGSEKLKGXXXXXXXXXXXXXXHHSASASNNNVTASVGVHRRRRRKKSEMKKRDPAHPKPNRSGYNFFFAEQHARLKPLNQGRDREISRTIGELWNKLNDSEKA 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme89346g00001 131 MobiDBLite consensus disorder prediction 65 79 - -
Trme89346g00001 131 MobiDBLite consensus disorder prediction 34 94 - -
Trme89346g00001 131 SUPERFAMILY HMG-box 72 131 IPR036910 -
Trme89346g00001 131 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 4 131 - -
Trme89346g00001 131 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 85 131 IPR009071 -
Trme89346g00001 131 Pfam HMG (high mobility group) box 85 131 IPR009071 -
Trme89346g00001 131 Gene3D High mobility group box domain 69 131 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme89346g00001 Trme-Chr89346 14 406 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme89346g00001 1 130 ARID Transcription Factor Family AT1G04880 61.429 2.19e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trme89346g00001 HMG_box 2.4e-06 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme89346g00001 - - gmx:100807028 179.104