Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme89243g00001 ATGAAGACCACCACTCAGAAGAGTGATGTTTACAGCTTTGGTGTGCTCCTTCTTGAAATGCTTACAGGGAAGACTCCACTTGGATATTCTGGTTATGATCATGACATGGTTGATCTTCCAAGGTGGGTTAGGTCGGTGGTTCGTGAGGAATGGACAGCTGAAGTTTTCGACGAGGAGATGATTAGAGGAGGAGAATATGTTGAAGAAGAGATGGTACAGATGCTTCAGATTGCATTGGCTTGTGTGTCAAAGGTGGTAGATAATAGGCCAACAATGGATGAAGTTGTCAGAAATATAGTGGA 302 0.4338 MKTTTQKSDVYSFGVLLLEMLTGKTPLGYSGYDHDMVDLPRWVRSVVREEWTAEVFDEEMIRGGEYVEEEMVQMLQIALACVSKVVDNRPTMDEVVRNIV 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme89243g00001 100 Gene3D Transferase(Phosphotransferase) domain 1 1 100 - -
Trme89243g00001 100 ProSiteProfiles Protein kinase domain profile. 1 100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme89243g00001 100 Pfam Protein tyrosine and serine/threonine kinase 3 98 IPR001245 GO:0004672|GO:0006468
Trme89243g00001 100 PANTHER OS05G0588300 PROTEIN 3 99 - -
Trme89243g00001 100 SUPERFAMILY Protein kinase-like (PK-like) 4 97 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme89243g00001 Trme-Chr89243 432 733 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme89243g00001 5 99 Receptor kinase-like Gene Family AT5G58300 70.526 6.12e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme89243g00001 PK_Tyr_Ser-Thr 4.1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme89243g00001 - - cam:101501552 187.193