Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme892425g00001 GCTGAGGTTTTGGGAAAGGGAACGTTTGGTACTGCTTATAAGGCGATTCTTGAGGACGCAACTGGGGTTGTTGTGAAGAGGTTGAAGGAGGTAGCCTTTGGAAAGAAGGATTTTGAGCAATTCATGGAGATTGTTGGAAGTCTTAAACATGAGAATGTGGTTGAGTTGAAGGCATATTATTATTCCAAAGATGAGAAACTGATG 204 0.4167 AEVLGKGTFGTAYKAILEDATGVVVKRLKEVAFGKKDFEQFMEIVGSLKHENVVELKAYYYSKDEKLM 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme892425g00001 68 ProSiteProfiles Protein kinase domain profile. 1 68 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme892425g00001 68 Gene3D Phosphorylase Kinase; domain 1 1 68 - -
Trme892425g00001 68 Pfam Protein kinase domain 2 67 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme892425g00001 68 PANTHER OS05G0588300 PROTEIN 1 68 - -
Trme892425g00001 68 ProSitePatterns Protein kinases ATP-binding region signature. 4 26 IPR017441 GO:0005524
Trme892425g00001 68 SUPERFAMILY Protein kinase-like (PK-like) 2 64 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme892425g00001 Trme-Chr892425 28 231 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme892425g00001 1 68 Receptor kinase-like Gene Family AT4G23740 83.824 5.07e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme892425g00001 Pkinase 4.9e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme892425g00001 - - gmx:100804799 127.487