Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8922g00001 GTGAACATTTTGACCCATACAGCAGAGGTATCATTAACTGATGAGCAACACGCTACTATTTCCAAACTGAAAGAAGCACACAAGGCACAAGATGAGAGAGAACACTGTGCTCCAGACTGGGCTGCTGTATGCCTAAATGGTCGACCTTGCGACGACCGAGAACGTATAGAAAATAAGGAAGTATTAGAATGCAAAGATACGGATAACTGTCCTATTGTAATCAGTGGGGATATCTTTCAAAATGATGTGTCTGAGGGGGACACTTTTCCTGCTATTTGTACAGAAAATGAAACAATGGTAACAAGTAGTGCCTTGTGGGACATATTTCGGAGAGAGGACACTGAAAAGTTAGGAGCATATCTTCGAAAACACTCGAAAGAATTCAGGCATACTTATTGTTCACCGGTTGAACAGGTTGTACATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCACAAGAAGAAGTTGAAGGAGGAGTTTGGTGTAGAACCGTGGACTTTTGAGCAAAAACTTGGAGAGGCAGTATTTATTCCTGCTGGATGCCCACATCAAGTCAGGAATCTCAAGTCATGCACAAAAGTTGCTGTAGACTTTGTGTCCCCAGAAAATGTCCGTGAGTGTCTTCGTTTAACTGAAGAATTCCGTCAGCTTCCCAAGAACCACAAAGTTAGAGAAGATAAACTTGAGATAAAGAAGATGATAGTCTATGCCGTTGATCAAGCTGTCAAAGACCTAAAAGCTTTACTCGATTGTTCTTGA 765 0.4118 VNILTHTAEVSLTDEQHATISKLKEAHKAQDEREHCAPDWAAVCLNGRPCDDRERIENKEVLECKDTDNCPIVISGDIFQNDVSEGDTFPAICTENETMVTSSALWDIFRREDTEKLGAYLRKHSKEFRHTYCSPVEQVVHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVRECLRLTEEFRQLPKNHKVREDKLEIKKMIVYAVDQAVKDLKALLDCS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8922g00001 254 SMART cupin_9 12 217 IPR003347 -
Trme8922g00001 254 FunFam Transcription factor jumonji (JmjC) domain-containing protein 40 226 - -
Trme8922g00001 254 Pfam JmjC domain, hydroxylase 93 200 IPR003347 -
Trme8922g00001 254 SUPERFAMILY Clavaminate synthase-like 105 253 - -
Trme8922g00001 254 Gene3D Cupin 1 226 - -
Trme8922g00001 254 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 250 IPR045109 GO:0032454|GO:0033169
Trme8922g00001 254 ProSiteProfiles JmjC domain profile. 1 217 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8922g00001 Trme-Chr8922 285 1431 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme8922g00001 JmjC 5e-17 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8922g00001 K15601 - gmx:100797860 404.06