Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme89216g00001 ATGGACAAAATACAGTCCCTTGAACTTTTCAGTTGGCATGCTTTTCGACAACCAAATCCTAGAGAAGATTTTACAAAACTCTCTAGAAAAGTAGTTGCTTATTGTGGAGGATTACCACTGGCTCTTGAAGTCCTTGGATCTTATTTATCTGAGAGAACAAAACAAGAATGGAAAAGTGCACTATCAAAATTAGAGAAAATTCCCAACGATCAAGTGCAAGAGAAACTGAGAATTAGCTACGATTGTTTAGAAGATCATACAGAAAAGGATATATTTCTTGACATATGTTGTTTCTTCATTGGAAAGAATAGAGCTGATGTTACGGCGATACTTAATGGTTGTGGACTTCATGCGGATATTGGAATAGCTGTCCTCATAGAGCGCAGCCTTGTAAAAGTTGAAAAGAATAACAAGCTTCGGATGCATGATTTGCTACGAGACATGGGAAGAGCAATTGTTGGTGAAAGTTCAGCAAAAGAGCCTGCAAAGCATAGCCGACTGTGGTTTCGTGAGGATGTGCTGGATGTTTTGTCAAAAAATACT 543 0.3831 MDKIQSLELFSWHAFRQPNPREDFTKLSRKVVAYCGGLPLALEVLGSYLSERTKQEWKSALSKLEKIPNDQVQEKLRISYDCLEDHTEKDIFLDICCFFIGKNRADVTAILNGCGLHADIGIAVLIERSLVKVEKNNKLRMHDLLRDMGRAIVGESSAKEPAKHSRLWFREDVLDVLSKNT 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme89216g00001 181 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 176 IPR044974 GO:0006952
Trme89216g00001 181 FunFam Disease resistance protein (TIR-NBS-LRR class) 2 84 - -
Trme89216g00001 181 Pfam NB-ARC domain 5 74 IPR002182 GO:0043531
Trme89216g00001 181 Gene3D - 1 84 IPR042197 -
Trme89216g00001 181 SUPERFAMILY "Winged helix" DNA-binding domain 71 177 IPR036390 -
Trme89216g00001 181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 95 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme89216g00001 Trme-Chr89216 113 655 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme89216g00001 1 168 WRKY Transcription Factor Family AT5G45050 37.278 1.21e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme89216g00001 - - vvo:131619861 324.324