Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme89202g00001 ATTGTTCTTGATTCTGGGGATGGTGTTAGTCACACAGTTCCCATCTACGAGGGTTATGCACTTCCACATGCAATCCTTCGTTTGGATCTTGCAGGCCGCGATCTAACNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNGAAATTGTGAGGGATGTGAAGGAGAAATTGGCTTATATTGCTATTGATTATGAGCAGGAGTTGGAAACTGCCAAGACTAGCTCAGCTGTTGAGAAGACCTATGAGTTACCTGACGGGCAGGTGATCACGATCGGTGCTGAAAGGTTCCGATGCCCTGAAGTTTTGTTCCAGCCATCCATGATAGGGATGGAATCTCCTGGTATCCATGAGACGACGTTTAACTCGATCATGAAGTGTGACGTTGACATTAGGAAGGATCTCTATGGTAACATTGTCTTGAGTGGTGGTTCGACAATGTTCCCTGGTATTGCTGATAGGATGAGTAAGGAGATTACCGCATTGGCACCTAGTAGCATGAAAATCAAGGTTGTAGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGTTCCATTTTGGCATCCCTCAGCACTTTCCAACAG 612 0.4167 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTXXXXXXXXXXXXXXXXXXXXEIVRDVKEKLAYIAIDYEQELETAKTSSAVEKTYELPDGQVITIGAERFRCPEVLFQPSMIGMESPGIHETTFNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme89202g00001 204 Gene3D - 189 204 - -
Trme89202g00001 204 Gene3D Actin; Chain A, domain 4 30 121 - -
Trme89202g00001 204 PANTHER ACTIN 1 202 IPR004000 -
Trme89202g00001 204 Coils Coil 57 65 - -
Trme89202g00001 204 Gene3D - 1 188 - -
Trme89202g00001 204 SUPERFAMILY Actin-like ATPase domain 1 204 IPR043129 -
Trme89202g00001 204 SMART actin_3 1 204 IPR004000 -
Trme89202g00001 204 FunFam Actin, alpha skeletal muscle 30 121 - -
Trme89202g00001 204 Pfam Actin 1 204 IPR004000 -
Trme89202g00001 204 FunFam Major actin 108 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme89202g00001 Trme-Chr89202 111 722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme89202g00001 1 204 Cytoskeleton Gene Families AT5G09810 85.784 3.21e-126 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme89202g00001 K10355 - gmx:100777705 353.984