Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme890794g00001 TTTGCCGGAAAGCAGCTTGAGGACGGCCGTACCCTGGCCGATTACAATATTCAGAAGGAGTCAACCCTCCACCTTGTGTTGCGTCTTCGTGGTGGTATGCAAATCTTCGTGAAGACCCTTACCGGAAAGACTATTACTCTTGAGGTTGAAAGCTCTGACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAGCAGAGGTTGATCTTTGC 233 0.4979 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme890794g00001 78 Gene3D - 33 78 - -
Trme890794g00001 78 PRINTS Ubiquitin signature 64 78 IPR019956 -
Trme890794g00001 78 PRINTS Ubiquitin signature 43 63 IPR019956 -
Trme890794g00001 78 Gene3D - 1 32 - -
Trme890794g00001 78 ProSiteProfiles Ubiquitin domain profile. 1 32 IPR000626 GO:0005515
Trme890794g00001 78 SUPERFAMILY Ubiquitin-like 32 77 IPR029071 -
Trme890794g00001 78 SUPERFAMILY Ubiquitin-like 1 32 IPR029071 -
Trme890794g00001 78 FunFam Polyubiquitin-C 33 78 - -
Trme890794g00001 78 ProSiteProfiles Ubiquitin domain profile. 33 78 IPR000626 GO:0005515
Trme890794g00001 78 SMART ubq_7 33 78 IPR000626 GO:0005515
Trme890794g00001 78 PANTHER UBIQUITIN 33 78 - -
Trme890794g00001 78 Pfam Ubiquitin family 1 30 IPR000626 GO:0005515
Trme890794g00001 78 Pfam Ubiquitin family 35 78 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme890794g00001 Trme-Chr890794 1 233 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme890794g00001 33 78 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 1.11e-27 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme890794g00001 K08770 - qsu:111989427 154.451