Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme89063g00001 ATGCAGGGTGCCAAGATCCACGCTTCTGTTCGTCGTCAGCTGCTCTATTTGTTTCGTGTGAAAATCACGGAAGGGAATGTTTATAAGATGTCGTTTTTCACTATAGCACCAGAATCTGGTGTTTACCACACAACTCAACATCCCTATAAGCTTATTTTCGAGATGAAAACAAAAGTTCAAAGCTGTGAAAACAATACCATATCTCGATTTGGGCTGTCACTTACCACTATTGGAGAGATTTGTGGCCATGGACYTGATTATGAWTTTTTAGTTGATGTTGTTGGGTTAATCACTGGTATTTCTGCTGAGAGGGAGTATATTCGTGATGGAAAGCTCACCAAGATGATTGTGTTGGAGTTGACTGATAATAGTGGAAAGTGTGAGTGTGCATTGTTTGGTGATTACGCTGATGATGTTCAAAAGATGATTGGCAAGATTGGTGTTGCTATGCCAGTGATTGTACTGCAGTTTGCCAAGATTAAGATTTTTCGAGGTTATTAG 501 0.3972 MQGAKIHASVRRQLLYLFRVKITEGNVYKMSFFTIAPESGVYHTTQHPYKLIFEMKTKVQSCENNTISRFGLSLTTIGEICGHGXDYXFLVDVVGLITGISAEREYIRDGKLTKMIVLELTDNSGKCECALFGDYADDVQKMIGKIGVAMPVIVLQFAKIKIFRGY 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme89063g00001 166 CDD RPA1_DBD_B_like 92 165 - -
Trme89063g00001 166 Gene3D - 67 166 IPR012340 -
Trme89063g00001 166 CDD RPA1_DBD_A_like 2 59 - -
Trme89063g00001 166 Gene3D - 1 64 IPR012340 -
Trme89063g00001 166 Pfam Domain of unknown function DUF223 2 65 IPR003871 -
Trme89063g00001 166 SUPERFAMILY Nucleic acid-binding proteins 72 165 IPR012340 -
Trme89063g00001 166 SUPERFAMILY Nucleic acid-binding proteins 2 64 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme89063g00001 Trme-Chr89063 31 717 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme89063g00001 3 165 Core DNA Replication Machinery Family AT5G45400 27.059 5.88e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme89063g00001 - - tpra:123893724 238.81