Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme889g00001 ATGTTTCCCAAGTCAACTCATGAAACATTTTCGACAAAACTTTATCAAACATTCAAAGATCACAAACGCTTCATCAAGCCAAAATTGGCACGCTCAGACTTCACTATTGTTCATTATGCAGGCGAGGTCCAGTATCAATCAGAGCACTTCTTAGACAAAAACAAAGACTATGTTGTTCCTGAACATCAAGACATGCTAAGTAATTCCAAATGTTCATTTGTATCAGGCCTTTTCTCTCCACTTTCTGAGGAGACAGCCAAATCTGCTAAGTTTTCTTCTATTGGTTCTCGTTTTAAGCTACAATTACAACATTTGATGGAAGCGCTCAATCTGACAGAGCCCCACTATATTAGATGTGTGAAGCCGAATACTCTATTAAAACCTGGGATATTTGAGAATATGAACGTCATGCATCAATTACGTTCTGGTGGTGTTCTTGAAGCCGTGAGAATAAAATGTGCTGGATTCCCCACTCACAGGACCTTTCATGAATTTTTAACTCGAGTAGGCATTCTTGCACCCGAGATCCTTCATGGGAACTTCGAAGAAAAGGAATCGTGTAAAAAGATTTTAGAGAAGATTGGGCTGACAGGTTATCAGATAGGGAAAACAAAAATATTCCTAAGAGCTGGTCACATGGCAGAATTGGATGCTCGGAGAGCATACATGCTTAACAATTCTGCAACAATTATCCAAAAGCAAACAAGAAGTTATTTTAGTCGGAAAACTTATATTGCACTGCGAAAGTCCTCTATCTTTGTGCAATCTATTTGCAGAGGAGAACTGGCACGGATACAATATTATCACATGAAGAGGAAAGCAGCTGCCATCAAAATTCAAACCTATACACGTGGAAGATTAGCCAGAAAAAACTACTTAAAAATAAGGAAGTGTGCCCTTGTCTTAGAGTCAGGTTTTCGGGCTTTGGCTGCTCGACGTGCTCGTGAAATATGGCAACGTAGAAAGCAAACTAAGGCATCAACTAGTATTCAGTCCTATTGGCGGCGACATAAAGCTCTCTTTAATTATCAGAACCTTAAGAAAGCAGCACTCATTTCAGAAAGTGTCAATCGCTCCAGCGATGAACATGAACAGAAGGTTATGGATATGTCAGTGGAAAATGAATGTCAATCCGTGGAAGAATCTTCAAATTTATTACCTGAAGCATCACCAAGTTCTTTCCAAGATAATGAAAGCATTGAAACTATTAGGGTTTTCCCTAATCCTCTCAGAGATACTGAAAACAACGAAGTTATTAGGGATTTCTCTAGTCCCCTCAGAGATGCTGAAAGCAATGAAGCTATTGGGGATTTCTCTAGTCCCCTCRAAGACACTGAAAAGATTGAGGCTCTTTCTGCAGAAATAAAAAATTTAAAG 1377 0.3914 MFPKSTHETFSTKLYQTFKDHKRFIKPKLARSDFTIVHYAGEVQYQSEHFLDKNKDYVVPEHQDMLSNSKCSFVSGLFSPLSEETAKSAKFSSIGSRFKLQLQHLMEALNLTEPHYIRCVKPNTLLKPGIFENMNVMHQLRSGGVLEAVRIKCAGFPTHRTFHEFLTRVGILAPEILHGNFEEKESCKKILEKIGLTGYQIGKTKIFLRAGHMAELDARRAYMLNNSATIIQKQTRSYFSRKTYIALRKSSIFVQSICRGELARIQYYHMKRKAAAIKIQTYTRGRLARKNYLKIRKCALVLESGFRALAARRAREIWQRRKQTKASTSIQSYWRRHKALFNYQNLKKAALISESVNRSSDEHEQKVMDMSVENECQSVEESSNLLPEASPSSFQDNESIETIRVFPNPLRDTENNEVIRDFSSPLRDAESNEAIGDFSSPLXDTEKIEALSAEIKNLK 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme889g00001 459 Gene3D Kinesin motor domain 113 151 IPR036961 -
Trme889g00001 459 MobiDBLite consensus disorder prediction 419 440 - -
Trme889g00001 459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 274 IPR027417 -
Trme889g00001 459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 351 IPR027417 -
Trme889g00001 459 Pfam Myosin head (motor domain) 1 209 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme889g00001 459 Gene3D Myosin VI head, motor domain, U50 subdomain 57 90 - -
Trme889g00001 459 Pfam IQ calmodulin-binding motif 248 267 IPR000048 GO:0005515
Trme889g00001 459 Pfam IQ calmodulin-binding motif 226 244 IPR000048 GO:0005515
Trme889g00001 459 Pfam IQ calmodulin-binding motif 324 339 IPR000048 GO:0005515
Trme889g00001 459 Pfam IQ calmodulin-binding motif 274 292 IPR000048 GO:0005515
Trme889g00001 459 ProSiteProfiles IQ motif profile. 224 251 IPR000048 GO:0005515
Trme889g00001 459 SMART iq_5 322 344 IPR000048 GO:0005515
Trme889g00001 459 SMART iq_5 271 293 IPR000048 GO:0005515
Trme889g00001 459 SMART iq_5 223 245 IPR000048 GO:0005515
Trme889g00001 459 SMART iq_5 246 268 IPR000048 GO:0005515
Trme889g00001 459 Gene3D - 1 112 - -
Trme889g00001 459 ProSiteProfiles Myosin motor domain profile. 1 221 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme889g00001 459 MobiDBLite consensus disorder prediction 378 400 - -
Trme889g00001 459 Gene3D - 155 222 - -
Trme889g00001 459 SMART MYSc_2a 1 222 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme889g00001 459 ProSiteProfiles IQ motif profile. 272 297 IPR000048 GO:0005515
Trme889g00001 459 PANTHER MYOSIN 1 382 - -
Trme889g00001 459 ProSiteProfiles IQ motif profile. 323 349 IPR000048 GO:0005515
Trme889g00001 459 Gene3D - 274 327 - -
Trme889g00001 459 Gene3D - 223 273 - -
Trme889g00001 459 ProSiteProfiles IQ motif profile. 247 276 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme889g00001 Trme-Chr889 263 3565 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme889g00001 1 355 Myosins gene family AT1G08730 62.254 2.69e-155 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme889g00001 K10357 - gmx:100803485 637.491