Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme88998g00001 ATGGTATCGTCTGGTTCACTTCACCAACTACTAGACCTTCTCCAATCCGCCTCTCTTCAACACCCCAACGTTCTCGACGCCGTACGTTCCGTCGCCGACCGCGACACCACTCGTCGTAAACTCTTCGTCCGTGGCCTATCAGGCGAAACCACCACCGACACACTCAGTTCAATTTTCTCTTCCTACGGTGAACTAGACGAAGCCATCGTGATATTCGATAAGAACACCGGTAGGTCTAAGGGATACGGTTTCGTCGTGTTCAAACACGTTGATGGTGCTATTCTCGCTTTAAAAGAACCAAGCAAGAAAATCGATGGAAGAATGACGGTGACGCAACTTGCGGCGGCGGGTTCTGGTTCTACCGGCGGCGATGTTTCTGCTCGTAAG 387 0.5142 MVSSGSLHQLLDLLQSASLQHPNVLDAVRSVADRDTTRRKLFVRGLSGETTTDTLSSIFSSYGELDEAIVIFDKNTGRSKGYGFVVFKHVDGAILALKEPSKKIDGRMTVTQLAAAGSGSTGGDVSARK 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme88998g00001 129 SMART rrm1_1 40 112 IPR000504 GO:0003723
Trme88998g00001 129 FunFam UBP1-associated protein 2C isoform A 22 125 - -
Trme88998g00001 129 Gene3D - 12 127 IPR012677 -
Trme88998g00001 129 SUPERFAMILY RNA-binding domain, RBD 29 114 IPR035979 GO:0003676
Trme88998g00001 129 PANTHER GEO13361P1-RELATED 22 119 - -
Trme88998g00001 129 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 116 IPR000504 GO:0003723
Trme88998g00001 129 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 107 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme88998g00001 Trme-Chr88998 21 613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme88998g00001 6 122 C2H2 Transcription Factor Family AT2G19380 41.880 1.35e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme88998g00001 K12741 - gmx:100816590 190.66