Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme88991g00001 ATGTTAACAGAAAAGGTGAAAGATAACTATAAATCGGTAGTGAATGACCACAACTTCATAACTGATGCGCTTCCTCGTGAAACAATCAATAATCTTCAAAAATCGGCGAAATTGATGGTGGATGCTGGCTTTGAGAAAGTGTGTTTTCAGGTTTACAACAGCTACCAGGTTGCTCTTAGAATACTATTTCCTAGTGAACGTCGAATCTACAATCGTGTCTTCTCGGATTCATTGTCTGCAATATCTGATCTGTATTTCTCAGAGCTTTGTCGTGGAGCGATAATTGAACTACTGAATTTTGCTGATTCATTTGCAAATCGAAGCCCTTCA 330 0.3848 MLTEKVKDNYKSVVNDHNFITDALPRETINNLQKSAKLMVDAGFEKVCFQVYNSYQVALRILFPSERRIYNRVFSDSLSAISDLYFSELCRGAIIELLNFADSFANRSPS 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme88991g00001 110 PANTHER EXOCYST COMPLEX PROTEIN EXO70 56 109 IPR004140 GO:0000145|GO:0006887
Trme88991g00001 110 Pfam Exo70 exocyst complex subunit 52 107 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trme88991g00001 110 Gene3D Exocyst complex component Exo70 2 110 - -
Trme88991g00001 110 SUPERFAMILY Cullin repeat-like 16 105 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme88991g00001 Trme-Chr88991 62 490 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme88991g00001 14 109 EXO70 exocyst subunit family AT5G58430 39.568 1.03e-21 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme88991g00001 K07195 - tpra:123922483 164.851