Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8898g00001 ATGGCTGGTTCTAGTTCTGTTTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGAAAATGTATAAGAGGTTGTGTTTTTGCACCTTATTTTAGTCATGAACAAGGTGCTACACATTTTGCAGCCATTCATAAGGTTTTTGGTGCAAGCAATGTCTCAAAACTTCTTGCTCATCTCCCTGTAAGTGATCGTTGCGAAGCCGCGGTTACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCTATTTATGGCTGTGTTTCCCATATTTTTGCCCTCCAACAACAGGTTGTCAATTTACAAACACAACTAGCTTATCTCAAAGAACAAGCATCACAAACTTGTGTCAACAATGCATCAACTAATGAAAACCCTAATGAAAAATCTACTACTCTTACTCCTCTCCAAGATCTTCAAAGTTTGTTCCATGTGGAAAATTCCAATAGTCACCAACATGGGCAAGAATTTCATACTAATAACTTGTCTAATATTTCCTCAACAACACAATATTATGTTAACAACAATAATCTCATGGATCTAAACCCTATGAGGAATTATGAAAATTCAAGAGGAGTCATGGAAGAAAACAGTTCATTTTCTAGCTTTGAGGAGAGTACTTCTAATTCCATGTCCTATGACATGCAAACAAATAGAAGGACATGGGGTTTTGATGAAGTTGAGGACTTACATTCAGTGGCTTTTGGATATAGTTGA 717 0.371 MAGSSSVSGSPCGACKFLRRKCIRGCVFAPYFSHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQTQLAYLKEQASQTCVNNASTNENPNEKSTTLTPLQDLQSLFHVENSNSHQHGQEFHTNNLSNISSTTQYYVNNNNLMDLNPMRNYENSRGVMEENSSFSSFEESTSNSMSYDMQTNRRTWGFDEVEDLHSVAFGYS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8898g00001 238 Coils Coil 91 111 - -
Trme8898g00001 238 PANTHER LOB DOMAIN CONTAINING PROTEIN 8 207 - -
Trme8898g00001 238 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Trme8898g00001 238 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8898g00001 Trme-Chr8898 60 1034 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8898g00001 11 237 AS2 family AT3G58190 51.304 5.24e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme8898g00001 LOB 4.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8898g00001 K13945 - gmx:100776678 317.775