Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme88977g00001 ATGGAAAAGATCTGGCATCACACATTTTACAATGAATTGCGTGTTGCTCCTGAGGAGCACCCAGTGCTTCTAACTGAGGCTCCACTCAACCCAAAGGCCAACAGAGAAAAGATGACCCAAATCATGTTCGAGACCTTTAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTCTATGCAAGTGGTCGTACAACTGGTATTGTCTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTACGAGGGTTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCGTGATCTAACTGAATCTTTGATGAAGATCCTCACTGAGAGAGGGTACATGTTCACCACCTCAGCTGAGCGGGAAATTGTCCGTGACATCAAGGAGAAGCTTGCCTATGTTGCTGTAGATTATGAACAAGAACTTGAGACTGCAAAGAGCAGTTCTTCAATTGAGAAAAACTATGAGCTTCCTGATGGACAGGTTATCACAATTGGAGCTGAGAGGTTCCGTTGCCCTGAAGTTCTTTTCCAGCC 548 0.4708 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTESLMKILTERGYMFTTSAEREIVRDIKEKLAYVAVDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme88977g00001 183 Gene3D Actin; Chain A, domain 4 99 183 - -
Trme88977g00001 183 SMART actin_3 1 183 IPR004000 -
Trme88977g00001 183 Gene3D - 57 98 - -
Trme88977g00001 183 SUPERFAMILY Actin-like ATPase domain 65 183 IPR043129 -
Trme88977g00001 183 Gene3D - 1 56 - -
Trme88977g00001 183 PANTHER ACTIN 1 183 IPR004000 -
Trme88977g00001 183 FunFam Actin, alpha skeletal muscle 56 116 - -
Trme88977g00001 183 CDD NBD_sugar-kinase_HSP70_actin 1 100 - -
Trme88977g00001 183 ProSitePatterns Actins and actin-related proteins signature. 23 35 IPR020902 -
Trme88977g00001 183 Pfam Actin 1 183 IPR004000 -
Trme88977g00001 183 PRINTS Actin signature 59 78 IPR004000 -
Trme88977g00001 183 PRINTS Actin signature 155 171 IPR004000 -
Trme88977g00001 183 PRINTS Actin signature 3 21 IPR004000 -
Trme88977g00001 183 PRINTS Actin signature 34 47 IPR004000 -
Trme88977g00001 183 FunFam Actin 12 33 55 - -
Trme88977g00001 183 FunFam Actin, muscle 99 183 - -
Trme88977g00001 183 SUPERFAMILY Actin-like ATPase domain 1 72 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme88977g00001 Trme-Chr88977 1 635 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme88977g00001 1 183 Cytoskeleton Gene Families AT5G09810 97.814 7.32e-133 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme88977g00001 K10355 - psom:113301616 362.073