Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme88863g00001 AAACGATTGTTTAGTTTGATCAACGATCTTCCCACCGTTTTCGAACTTGTGTCGGACAGGAAACCAGTTAAGGACAACAAGCCAGCAGCGGACAGTGGAAGCAAATCCCGAGGAAGCACCAAGAGATCCAATGACGGGCAAGTCAAAAGCAACCCAAAGTTTGCTGCGGATGATGGTTATGAGGAGGAGGAAGACGAGCACAGCGAAACACTTTGTGGAAGCTGCGGCGGAAATTACAACGCGGACGAGTTTTGGATTGGCTGCGATATATGTGAGAGGTGGTACCACGGAAAATGTGTGAAGATCACTCCTGCGAAGGCCGAGAGCATAAAGCAATACAAGTGCCCTCAATGCAGCATCAGGCGGAACAGACCTTAG 378 0.4947 KRLFSLINDLPTVFELVSDRKPVKDNKPAADSGSKSRGSTKRSNDGQVKSNPKFAADDGYEEEEDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPQCSIRRNRP 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme88863g00001 125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 119 IPR013083 -
Trme88863g00001 125 MobiDBLite consensus disorder prediction 32 50 - -
Trme88863g00001 125 FunFam PHD finger alfin-like protein 64 120 - -
Trme88863g00001 125 PANTHER CPG BINDING PROTEIN 1 124 IPR045104 GO:0006355|GO:0042393
Trme88863g00001 125 MobiDBLite consensus disorder prediction 21 62 - -
Trme88863g00001 125 SUPERFAMILY FYVE/PHD zinc finger 60 123 IPR011011 -
Trme88863g00001 125 SMART PHD_3 71 119 IPR001965 -
Trme88863g00001 125 CDD PHD_AL_plant 71 121 IPR044104 -
Trme88863g00001 125 ProSitePatterns Zinc finger PHD-type signature. 72 118 IPR019786 -
Trme88863g00001 125 Pfam PHD-finger 72 119 IPR019787 -
Trme88863g00001 125 ProSiteProfiles Zinc finger PHD-type profile. 69 121 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme88863g00001 Trme-Chr88863 204 667 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme88863g00001 1 124 Alfin-like Transcription Factor Family AT5G05610 70.968 2.93e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Trme88863g00001 PHD 1.4e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme88863g00001 K26274 - gmx:100793126 222.246