Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme88840g00001 ATGTTAGATTCTAGTTTCAATGTTAAGCTTGGTGACTTTGGGTTGGCTAAGCTAATGGACCATGAGATTGGGCCCCAAACAACGGTGGTTGCCGGAACCTTAGGATATTTGGCTCCAGAATATATAAGTACAGGTAAGGCTAGTAAAGAGTCAGATGTTTATAGTTTTGGAGTTGTTGCTTTGGAGATCACAACCGGACGAAAAGCTGTTGAAGTAATGAGGGACAAAGATGGAGAGAAGGGATTGATTGAGTGGGTTTGGGATCATTATGGGAAAGGAGAATTATTTATGGCCATGGATGATTATTTGCAAAAAGAATTTGATGAGAAACAAGTAGAGCGTTTGATGATTGTTGGACTTTGGTCTTCGCATCCGGATGTAAATCTAAGACCATTGATTAGACAAGTTATTCAAGTGCTTAATTTTGAGGTTGGTCTGCCAAATCTTCCACCAAAGAGGCCTGTTGCAACCTATCATGATCCTCTATCGTTGTCTGTAAGCTCGGTAGGAGCTTCGCTAACCACAAGCTTTCAAGATGGTCATTAA 546 0.4084 MLDSSFNVKLGDFGLAKLMDHEIGPQTTVVAGTLGYLAPEYISTGKASKESDVYSFGVVALEITTGRKAVEVMRDKDGEKGLIEWVWDHYGKGELFMAMDDYLQKEFDEKQVERLMIVGLWSSHPDVNLRPLIRQVIQVLNFEVGLPNLPPKRPVATYHDPLSLSVSSVGASLTTSFQDGH 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme88840g00001 181 Gene3D Transferase(Phosphotransferase) domain 1 1 162 - -
Trme88840g00001 181 Pfam Protein kinase domain 1 76 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme88840g00001 181 ProSiteProfiles Protein kinase domain profile. 1 127 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme88840g00001 181 PANTHER - 1 143 - -
Trme88840g00001 181 SUPERFAMILY Protein kinase-like (PK-like) 1 163 IPR011009 -
Trme88840g00001 181 FunFam Lectin-domain containing receptor kinase A4.3 1 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme88840g00001 Trme-Chr88840 15 560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme88840g00001 1 159 Receptor kinase-like Gene Family AT5G10530 67.081 2.20e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme88840g00001 Pkinase 8.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme88840g00001 - - jre:108982580 246.128