Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8880g00001 ATGATCTCTTCCAATATTGGCGAGGTTGCTTCTATATTTCTTACAGCTGCACTAGGAATTCCTGAAGGACTGATACCTGTCCAGCTTCTGTGGGTCAATCTTGTCACTGATGGACCCCCTGCAACAGCTTTGGGATTTAATCCTCCAGATAAGGATATAATGAAGAAGCCTCCTCGTCGCAGTGATGACTCACTAATTAACTTGTGGATTTTATTCCGCTATCTGGTTATTGGGATTTATGTTGGATTAGCTACTGTTGGTGTCTTCATTATATGGTATACACATGGTTCCTTTTTGGGAATTGACCTCAGCGGGGATGGACATACTCTTGTGACTTACTCCCAGCTTGCCAACTGGGGTCAATGCTCCTCTTGGAATAACTTCACTGCTGCTCCCTTCACCGCTGGTTCTAGAGTCATCTCTTTTGATGCTGACCCATGCGACTACTTCCATACTGGTAAAGTGAAAGCTATGACATTGTCCCTCTCTGTGTTGGTAGCCATTGAAATGTTCAACTCTCTCAATGCCCTGTCTGAAGATGGAAGTCTTTTGACAATGCCCCCATGGGTGAACCCTTGGCTTCTTTTGGCAATGTCCATTTCATTTGGGCTGCACTTTTTGATCTTGTACGTGCCATTCTTAGCACAAGTATTTGGCATCGTACCGTTGAGCGTCAACGAGTGGCTTTTGGTTTTGGCGGTTGCATTGCCTGTCATTCTAATTGACGAGATTTTGAAATTCGTTGGGAGATGTACAAGTGGGTCTGCAAGAAGCTCAAAGCAAAAAACAGAGTAG 795 0.444 MISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLINLWILFRYLVIGIYVGLATVGVFIIWYTHGSFLGIDLSGDGHTLVTYSQLANWGQCSSWNNFTAAPFTAGSRVISFDADPCDYFHTGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSISFGLHFLILYVPFLAQVFGIVPLSVNEWLLVLAVALPVILIDEILKFVGRCTSGSARSSKQKTE 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8880g00001 264 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 1 256 - -
Trme8880g00001 264 Gene3D - 1 256 - -
Trme8880g00001 264 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 251 IPR023298 -
Trme8880g00001 264 PANTHER CALCIUM-TRANSPORTING ATPASE 1 256 - -
Trme8880g00001 264 Pfam Cation transporting ATPase, C-terminus 22 248 IPR006068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8880g00001 Trme-Chr8880 691 1605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8880g00001 1 264 Primary Pumps ATPases(2) AT1G07810 84.758 2.51e-163 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8880g00001 K01537 - gmx:100788807 487.648