Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8877g00001 CTACAACAAACATTTTTATGTTCATGTGAAGGATTTAGAGAGGATAGAGGATTAACTTTGGAGAACCGAAAGCGTGAGCCAAAGAATGAAACAAGATGTGGGTGCAAGGCGAAATTTAGAGTGCACGTAGACATTGTGTCTATGCGGTGGTATGTTACTCTACTTGAAATTGATCACAATCATGACTTGCTAGGTGGTACTTTGTGTGGCTTATTACCAGCACATAGAAAGATGAGTCAAGGTGATATAGATGAAATTGGACGTAACCGAAAAGCAGGGATACGACCATACCAAGTGTACGGTTCGATGGCTAATACATCTGGTGGTTTTCACAAGGTCGGTTTTGTTAAAAAAGATCTTTATAACCAAGTTGGTAAACAAAAGAAACTACTTTATTCTGATGCATGTGGTGCAGTGAAGTATCTTCAAGAGCTTTGCACAAAAGACCCACTCATGTTTGTGGCACACTCGATTGACAAAGAAAGAAAGCTTGAGCGATTATTTTGGTGTGATGGGGAGAGTCGAATGAACTATGAGATATTTGGAGATGTTTTGGCTTTTGATGCGACATATAGGAAAAACAAATACAATTGTCCATTTGTTGTCTTTTCTGGGGTTAATCACCATAACCAAACCATAGTTTTTGCGACAGGTATTGTCACGCGAGAGACTGAAGAGACATATGTATGGTTGTTGGAACAATTGTTGATTGCCATGAAAGGTAAGCACCCATTGTCTGTAATTACTGATGGGGACACTGCAATTAAAAATGCTATAAAGAGAATATTCCCTAAAGCTCATCACAGATTGTGTGCGTGGCATTTGTTAAGGAACGTGTCGTCCAATATTGGGATACCGGATGTTATGTCTCATATTAAAAGATGCATGTTGGGCGACATGGAAGTTGGTCAATTTGAAATGTTATGGCATGAGATGGTCGAAAAGTTTGATTTACATGACAACAATTGGATTAAAGAAATATGCCTAACTTATTTTCGCTTTAGAGAAATTGAGGCTGATTTCCAATCTAACTATGGTCAGCCAGTGTTGCAGACTAGTCTGAGAGGCATAGAGAGATCCGCAGCAAAACAGTTTACAAAAGAGATATTTATTCTGTTTCGATCCGTACTTAAGAAGGCAATGTTACTCCGAGTTATTGAATGTCAAGAAATGAGTACGGGATATATTTTGAAAGTTGTGAAATATTGTGGTGTTGGTCGTGTATGGCATGTAACATATTGTGAAGATCCGCTTGATCTAAGATGTTCTTGTTTGAGGATGGAATCTCTAGGACTACCATGTGATCATATTGTTGCTGTATTGTTGTATCTAGATATTGATGATCTTCCAAGTTGCTTGGTCTTACCTAGGTGGTCAAAATATGCAAAGGATCAAATTCGGGAAAAATATGGTAATGGTTCCCTATACTGGGACTCACAACCAGCTGCGAGATATTCAGGCATTTTTCAGATGTGTAAGGTTGTTGCTGAGTTGGTTCATGACGATCTAGATGAGTTTAATAACGTCATTGACATGTTGGGAGACGGATAA 1551 0.3862 LQQTFLCSCEGFREDRGLTLENRKREPKNETRCGCKAKFRVHVDIVSMRWYVTLLEIDHNHDLLGGTLCGLLPAHRKMSQGDIDEIGRNRKAGIRPYQVYGSMANTSGGFHKVGFVKKDLYNQVGKQKKLLYSDACGAVKYLQELCTKDPLMFVAHSIDKERKLERLFWCDGESRMNYEIFGDVLAFDATYRKNKYNCPFVVFSGVNHHNQTIVFATGIVTRETEETYVWLLEQLLIAMKGKHPLSVITDGDTAIKNAIKRIFPKAHHRLCAWHLLRNVSSNIGIPDVMSHIKRCMLGDMEVGQFEMLWHEMVEKFDLHDNNWIKEICLTYFRFREIEADFQSNYGQPVLQTSLRGIERSAAKQFTKEIFILFRSVLKKAMLLRVIECQEMSTGYILKVVKYCGVGRVWHVTYCEDPLDLRCSCLRMESLGLPCDHIVAVLLYLDIDDLPSCLVLPRWSKYAKDQIREKYGNGSLYWDSQPAARYSGIFQMCKVVAELVHDDLDEFNNVIDMLGDG 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8877g00001 516 ProSiteProfiles Zinc finger SWIM-type profile. 409 445 IPR007527 GO:0008270
Trme8877g00001 516 Pfam FAR1 DNA-binding domain 2 64 IPR004330 -
Trme8877g00001 516 Pfam SWIM zinc finger 416 444 IPR007527 GO:0008270
Trme8877g00001 516 Pfam MULE transposase domain 184 278 IPR018289 -
Trme8877g00001 516 SMART 26again6 420 447 IPR006564 GO:0008270
Trme8877g00001 516 PANTHER OS01G0519700 PROTEIN 3 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8877g00001 Trme-Chr8877 1 1776 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trme8877g00001 MULE 9.6e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8877g00001 - - tpra:123884554 830.476