Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme887378g00001 AAGGTTCACGGTTCACTTGCTCGTGCCGGAAAAGTGAGAGGCCAAACACCAAAGGTGGCCAAGCAGGACAAGAAGAAGAAGCCACGTGGTCGTGCTCACAAGCGTATGCAGTACAATCGCCGATTCGTCACTGCCGGTATACCTCAA 147 0.5306 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAGIPQ 49
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme887378g00001 49 PANTHER 40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI 1 45 - -
Trme887378g00001 49 Pfam Ribosomal protein S30 1 44 IPR006846 GO:0003735|GO:0005840|GO:0006412
Trme887378g00001 49 MobiDBLite consensus disorder prediction 1 38 - -
Trme887378g00001 49 MobiDBLite consensus disorder prediction 20 38 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme887378g00001 1 45 Cytoplasmic Ribosomal Protein Gene Family AT5G56670 95.556 7.73e-18 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme887378g00001 K02983 - vvi:100241142 86.6557