Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8871g00001 ATGAATATCGAAGAGTCTGTGCGCAAGCAGATAGCTAAAGAGCTGAAAATTAATCAAGCAGCACAATGTCCTTATGTTGTTGTCTGCTACCAATCATTCTATGATAATGGTGTCATATCAATCATCTTAGAGTACATGGATGGAGGTTCCATGGCTGATCTTCTGAACAAAGTTAAAACAATTCCGGAGCCTTATCTTTCTGCCATCTGCGAAGTTAAGATTACTGATTTTGGTGTTAGTGCAATTATGGAAAATACATCTGGTCAAGCAAATACTTTCATTGGCACATACAACTATATGTCTCCAGAGAGGATCAATGGAAGCCAACGTGGTTACAACTACAAGAGTGATATATGGAGTTTGGGACTAATATTGCTCGAGTGTGCTTTGGGGAGGTTTCCATATACACCACCAGATCAAAGTGAAAGATGGGAAAGTATATTTGAGCTTATTGAAACTATTGTCGACAAACCTCCTCCTACTCCTCCATCTGAACAATTTTCTGCAGAATTTTGCTCATTTATCTCTGCATGTCTACAGAAAGACCCGGCAAACAGACTGTCGGCTCAGGAACTTATGGAACTTCCTTTCATCAGCATGTATGATGACCAGCATGTGGATCTTTCAGCTTTCTTCTCCAATGCAGGATCTCCACTCGCAACCTTATAA 669 0.4021 MNIEESVRKQIAKELKINQAAQCPYVVVCYQSFYDNGVISIILEYMDGGSMADLLNKVKTIPEPYLSAICEVKITDFGVSAIMENTSGQANTFIGTYNYMSPERINGSQRGYNYKSDIWSLGLILLECALGRFPYTPPDQSERWESIFELIETIVDKPPPTPPSEQFSAEFCSFISACLQKDPANRLSAQELMELPFISMYDDQHVDLSAFFSNAGSPLATL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8871g00001 222 SUPERFAMILY Protein kinase-like (PK-like) 5 206 IPR011009 -
Trme8871g00001 222 ProSiteProfiles Protein kinase domain profile. 1 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme8871g00001 222 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 2 70 - -
Trme8871g00001 222 Gene3D Phosphorylase Kinase; domain 1 1 47 - -
Trme8871g00001 222 Gene3D Transferase(Phosphotransferase) domain 1 48 218 - -
Trme8871g00001 222 Pfam Protein kinase domain 71 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme8871g00001 222 Pfam Protein kinase domain 5 69 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8871g00001 Trme-Chr8871 292 1770 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8871g00001 1 220 MAP Kinase Kinase Gene Family AT4G26070 54.510 2.80e-95 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Trme8871g00001 Pkinase 8.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8871g00001 K20603 - gmx:100789734 394.045