Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme88684g00001 | ATGGTATTTGCAGGCACAACTGTAGTCAATGGAAGCTGTCTTTGCATTGTTATTACCACAGCAATGAACACCGAAATCGGAAAGATACAAAAGCAAATACACGAGGCTTCGTTGGAGGAGAGCGATACTCCGTTGAAGAAGAAGTTGGACGAATTTGGTGGAAGGCTAACAACTTCTATTGGAATAGTTTGTCTTGTTGTGTGGATTATAAACTACAAAAATTTCATTTCTTGGGATGTTGTTGATGGATGGCCTTCAAACATTCAATTTTCTTTTCAGAAATGCACTTACTATTTCAAAATCGCCGTCGCTCTTGCTGTTGCTGCAATACCAGAAGGTCTTCCGGCGGTTATCACAACATGTTTAGCACTTGGTACAAGAAAAATGGCACAAAAGAATGCAATTGTGAGAAAGCTTCCAAGTGTTGAAACTTTAGGATGTACCACTGTGATTTGTTCAGATAAAACCGGTACACTGACTACGAATCAAATGTCTGCGACGGNGTTTTTTACTTTAGGAGGGAAAACCACTGCTTCTAGAGTCCTTAGAGTTGAAGGGACAACTTATGATCCAAAGGATGGAGGCATTGTTGATTGGACTTGCTATAACATGGATGCTAACTTGTTAGCCATGGCAGAAATATGTGCTGTTTGTAATGATGCCGGGGTTTATTTTGACGGTCGCTTATTTCGAGCCACAGGTTTGCCT | 708 | 0.4068 | MVFAGTTVVNGSCLCIVITTAMNTEIGKIQKQIHEASLEESDTPLKKKLDEFGGRLTTSIGIVCLVVWIINYKNFISWDVVDGWPSNIQFSFQKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSATXFFTLGGKTTASRVLRVEGTTYDPKDGGIVDWTCYNMDANLLAMAEICAVCNDAGVYFDGRLFRATGLP | 236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme88684g00001 | 236 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 159 | 227 | IPR023299 | GO:0000166 | |
| Trme88684g00001 | 236 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 154 | 160 | IPR018303 | - | |
| Trme88684g00001 | 236 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 2 | 228 | - | - | |
| Trme88684g00001 | 236 | FunFam | Calcium-transporting ATPase, putative | 7 | 148 | - | - | |
| Trme88684g00001 | 236 | Gene3D | - | 1 | 182 | - | - | |
| Trme88684g00001 | 236 | Pfam | E1-E2 ATPase | 1 | 132 | - | - | |
| Trme88684g00001 | 236 | FunFam | Phospholipid-transporting ATPase IC | 149 | 161 | - | - | |
| Trme88684g00001 | 236 | NCBIfam | HAD-IC family P-type ATPase | 89 | 176 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Trme88684g00001 | 236 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 19 | 146 | IPR023298 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme88684g00001 | Trme-Chr88684 | 28 | 735 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme88684g00001 | 1 | 236 | Primary Pumps ATPases(2) | AT4G00900 | 84.810 | 1.53e-135 | 405 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme88684g00001 | K01537 | - | cave:132186527 | 452.981 |