Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme88639g00001 TCTAAGAACAGCAAGAAGAGAGCTAGGCCCGGGGAAAGTTGCAGACCTCGTCCAAGAGACAGGCAACTGATCCAAGATCGAATTAAGGAGCTGAGAGAGCTGGTGCCAAATGGAGCAAAGTGCAGTATTGATTCACTACTGGAGCGTTCGATAAAGCACATGCTTTTTCTGCAAGGCATAGCTAAGCATGCTGACAAGCTAACTAAATTWGCTKATACTAAATCAAAGTTGCATCATATGGAAACAGATATTCTTGGATCCTCTAGTTCAGAGCAGGGTTCAAGTTGGGCAGTGGAGGTAGGGGGACATCTGAAAGTTCATTCAATATTAGTCGAGAATCTTAGCAAGAATGGACAGATGCTTGTTGAG 369 0.439 SKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLERSIKHMLFLQGIAKHADKLTKXAXTKSKLHHMETDILGSSSSEQGSSWAVEVGGHLKVHSILVENLSKNGQMLVE 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme88639g00001 123 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 8 57 IPR011598 GO:0046983
Trme88639g00001 123 MobiDBLite consensus disorder prediction 1 23 - -
Trme88639g00001 123 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 123 IPR043561 GO:0003700|GO:0006355
Trme88639g00001 123 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 85 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme88639g00001 Trme-Chr88639 179 736 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme88639g00001 2 123 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 68.852 4.24e-49 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme88639g00001 - - mtr:25499239 219.164