Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme88583g00001 | ATGGAAGATTCTGTTTCGGTGCATCCATCGTTTTGTGAAGAAAAGAGTGAACAAAAACAGAAACCATTTCATTTCTTTGGAGTTTACGACGGTCATGGTTGTTCACATGTTGCAACTATGTGTAAACAAAGGTTACATGAAATTGTTGATGATGAAATAAACAAAAACAAAGAGAAAGAGAGCGTTGACTGGAAGTCAACGATGGAGAAGAGTTTCATTCGCATGGATGAAGAGGTTTTGAATTCCACCAAGACAAAACAGAGCTTCACTTGTAAGTGTGAGCTTCAAACTCCTCACTGTGACGCCGTTGGTTCCACCGCCGTTGTTGCCGTTGTCACGCCGGAGAAAATCATTGTTTCCAATTGTGGTGATTCGCGTGCTATTCTTTGTCGTAAGGGTGTCGCCGTTCCTCTTTCCTCTGATCACAAGCCGGATCGACCCGATGAGTTGGATCGGATAAACTCCGCCGGAGGACGCGTGATCTATTGG | 489 | 0.4417 | MEDSVSVHPSFCEEKSEQKQKPFHFFGVYDGHGCSHVATMCKQRLHEIVDDEINKNKEKESVDWKSTMEKSFIRMDEEVLNSTKTKQSFTCKCELQTPHCDAVGSTAVVAVVTPEKIIVSNCGDSRAILCRKGVAVPLSSDHKPDRPDELDRINSAGGRVIYW | 163 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme88583g00001 | 163 | SMART | PP2C_4 | 1 | 163 | IPR001932 | - | |
| Trme88583g00001 | 163 | PANTHER | PROTEIN PHOSPHATASE | 2 | 163 | IPR015655 | GO:0004722|GO:0006470 | |
| Trme88583g00001 | 163 | Gene3D | - | 1 | 163 | IPR036457 | - | |
| Trme88583g00001 | 163 | ProSitePatterns | PPM-type phosphatase domain signature. | 25 | 33 | IPR000222 | GO:0043169 | |
| Trme88583g00001 | 163 | Pfam | Protein phosphatase 2C | 7 | 161 | IPR001932 | - | |
| Trme88583g00001 | 163 | CDD | PP2Cc | 1 | 163 | IPR001932 | - | |
| Trme88583g00001 | 163 | SUPERFAMILY | PP2C-like | 1 | 163 | IPR036457 | - | |
| Trme88583g00001 | 163 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 163 | IPR001932 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme88583g00001 | Trme-Chr88583 | 55 | 736 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme88583g00001 | 1 | 163 | PP2C-type Phosphatase Gene Family | AT1G07430 | 66.258 | 2.11e-78 | 238 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme88583g00001 | K14497 | - | gmx:100807302 | 243.817 |