Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme88492g00001 ATGTTAACTGTTTCTGAAACTTTTGCTTTCTCTGCTTCTCTTCTTAAGCCTAAAACAATTGATATTACTTCCATTGTTTCTTCTCTTCTAAATGAGCTTAGACTAACTCATTTAGCTAATACAAGGCTTAATCATGGTTTATCTGGTGGCGAACGTAGAAGGGTCTCTATTGGACTTAGTCTTCTTCATGATCCTGCTGTTTTGCTACTTGATGAACCTACTTCTGGTCTTGATAGTTCCTCTGCTTACAAAGTCATGCAAACTCTTAAATCAACTTGTGTTTCATATAACAGAACAATTGTTCTTTCTATTCATCAACCAAGTTTCAAGATTCTCTCTTGTATTGATAGAATCTTGCTTCTTTCAAAAGGAACTGTTGTTCATCATGGAAGCTTAGCTTCACTTCAAGCATTTTTGCATTCAAAAGGTTTCACTGTTCCTCATCAGCTTAATGCATTGGAATATGCAATGGAAATATTGAACCAATTGAATGAGATTAAACCAATGATTACTCCTCCAACTCCACCTGAATCACCTGAACAATCCTCACTAGAAAAATCTAAATCTACTTTAGGTTGTAATTCTCTGTCCGAAAATATTGGAACTAGAACTAAAAATAGAGAAATCAG 629 0.3466 MLTVSETFAFSASLLKPKTIDITSIVSSLLNELRLTHLANTRLNHGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSSSAYKVMQTLKSTCVSYNRTIVLSIHQPSFKILSCIDRILLLSKGTVVHHGSLASLQAFLHSKGFTVPHQLNALEYAMEILNQLNEIKPMITPPTPPESPEQSSLEKSKSTLGCNSLSENIGTRTKNREI 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme88492g00001 209 Pfam ABC-2 type transporter 105 165 IPR043926 GO:0140359
Trme88492g00001 209 Gene3D - 1 169 IPR027417 -
Trme88492g00001 209 MobiDBLite consensus disorder prediction 180 202 - -
Trme88492g00001 209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 146 IPR027417 -
Trme88492g00001 209 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 186 - -
Trme88492g00001 209 Pfam ABC transporter 26 75 IPR003439 GO:0005524
Trme88492g00001 209 MobiDBLite consensus disorder prediction 167 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme88492g00001 Trme-Chr88492 77 705 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme88492g00001 47 142 Calmodulin-binding Proteins AT2G36910 28.440 4.09e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme88492g00001 K05681 - gmx:100790712 284.648