Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme88427g00001 ACTCCTTGCTTCAGAGGATATGGAAGGCGCAATGGAGAGCGAAGGAGGAAGTCTGTTCGTGGTTGCATTGTCAGCCCAGACCTATCTGTTCTCAACTTGGTTATTGTGAAGAAGGGTGAAAATGATTTGCCAGGTTTGACTGATGTTGAAAAGCCAAGAATGAGGGGTCCCAAAAGAGCTTCCAAAATCCATAGGGCTGCGGGGAAGGTGGGATTTAGTTCTGAATATATGCTTGGAGAATAA 243 0.4568 TPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIHRAAGKVGFSSEYMLGE 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme88427g00001 80 SMART Ribosomal_S6e_2 4 48 IPR001377 GO:0003735|GO:0005840|GO:0006412
Trme88427g00001 80 Pfam Ribosomal protein S6e 2 48 IPR001377 GO:0003735|GO:0005840|GO:0006412
Trme88427g00001 80 PANTHER 40S RIBOSOMAL PROTEIN S6 1 65 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme88427g00001 Trme-Chr88427 221 610 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme88427g00001 1 65 Cytoplasmic Ribosomal Protein Gene Family AT4G31700 92.308 2.32e-39 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme88427g00001 K02991 - gmx:100801194 117.087