Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme88378g00001 ATGGGTAACGTTGAAATCCCTAATTGGCTTGAGGGGTTGCCACTGGCACCTGAATTTCGACCTACTGATACTGAATTTTCTGACCCAATTGCTTATATTTCAAAGATTGAGAAAGAAGCTAGTAATTTTGGGATATGCAAGATTATTCCACCTTTGCCCAAACCTTCAAAAAAATATGTTTTTTCTAATTTGAATAAGTCCCTCTTGAAGCGTCCTGAATTGGGTCTAGATAATAGTTCTTTAGGTGTTGGTAATTCTTGGAAAATGGGCGCCGATGGTAGTAACGGTGGGGTATCGCGGGCCGTGTTTACCACAAGGCAACAAGAAGTGGGGCAGAATGTGAAAAAAACCAAAGGGGGAGTTCAGAAGCCACTGTCATGTGTTCATAAGCAAGTATGGCAAAGTGGAGAGGTTTATACATTGGAACAGTTTGAGGCCAAATCGAAGTCTTTCGCTAGAAGCATTCTAGGTACGTCGAAGGACGTTTCTCCACTGGTTGTAGAGGCTATGTTTTGGAAGGCAGCTTTGGAGAAGCCTATATATGTGGAGTATGCCAATGACGTGCCTGG 569 0.4288 MGNVEIPNWLEGLPLAPEFRPTDTEFSDPIAYISKIEKEASNFGICKIIPPLPKPSKKYVFSNLNKSLLKRPELGLDNSSLGVGNSWKMGADGSNGGVSRAVFTTRQQEVGQNVKKTKGGVQKPLSCVHKQVWQSGEVYTLEQFEAKSKSFARSILGTSKDVSPLVVEAMFWKAALEKPIYVEYANDVPG 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme88378g00001 190 Gene3D Cupin 2 190 - -
Trme88378g00001 190 Pfam jmjN domain 17 50 IPR003349 -
Trme88378g00001 190 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 190 - -
Trme88378g00001 190 SMART JmjN_1 15 55 IPR003349 -
Trme88378g00001 190 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme88378g00001 Trme-Chr88378 1 569 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme88378g00001 1 190 C2H2 Transcription Factor Family AT5G04240 69.271 5.30e-80 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme88378g00001 JmjN 6.1e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme88378g00001 - - gmx:100819845 310.842