Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme88358g00001 ATGGATTCGCTTTTGCAAATCAGTGAAGAGGCTCTTTACCGGTTTGAAAATGATTTGGGTGGTGATGGTTCCCAGTTAGAGGCTTTGTCCCCTTTAGGACGACAAATACTGCTGTTGATGTCTGAACTTGAATACAATCTTGACGAAAAATCAAAACTTTATGAAGACAGTGCATTGCAGCAGGTATTTTTGATGAACAATCTTTATTATCTAGTGCGCAAAGTGAAGGACTCGGATCTTAGAGGGCTGTTGGGAGATGATTGGGTTCGTAAACGCCGCGGTCAAGTACGACAGTATGCTACGGGATACCTCAGAGCCTCTTGGAGCAAGGCCTTGTCTTGTTTGAAGGATGAAGGGATTGGAGGGAGCTCTAATAATGCATCAAGGGTGGCTTTGAAGGAGAGGTTCAAGAATTTCAATGCATGTTTTGAAGAAATATACAGGGTTCAGACAGCTTGGAAGGTACCTGATGATCAGCTTCGTGAAGAGATGCGGATAAATATATCAGAGAAGGTGATTCCTGCATACCGCTCATTTATGGGGAGATTTAGCGGTCAACTGGAGGGAAGACATGCAGGCAAATACATTAA 590 0.4339 MDSLLQISEEALYRFENDLGGDGSQLEALSPLGRQILLLMSELEYNLDEKSKLYEDSALQQVFLMNNLYYLVRKVKDSDLRGLLGDDWVRKRRGQVRQYATGYLRASWSKALSCLKDEGIGGSSNNASRVALKERFKNFNACFEEIYRVQTAWKVPDDQLREEMRINISEKVIPAYRSFMGRFSGQLEGRHAGKYI 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme88358g00001 196 PANTHER EXOCYST COMPLEX PROTEIN EXO70 16 188 IPR004140 GO:0000145|GO:0006887
Trme88358g00001 196 Gene3D Exocyst complex component Exo70 2 196 - -
Trme88358g00001 196 Pfam Exo70 exocyst complex subunit 17 196 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trme88358g00001 196 SUPERFAMILY Cullin repeat-like 28 196 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme88358g00001 Trme-Chr88358 10 599 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme88358g00001 1 196 EXO70 exocyst subunit family AT5G50380 63.768 4.17e-80 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme88358g00001 K07195 - gmx:100818693 353.599