Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme88236g00001 GCCCCTGACATGGCTGCACGTCTTCATTCTACCCGTGTATTGGGAACCTTTGGGTATCATGCTCCAGAATATGCCATGACTGGGCAGTTGACTCAAAAAAGTGATGTCTACAGTTTTGGCGTTGTTCTTCTTGAACTTCTTACAGGTAGGAAACCCGTTGATCATACCATGCCTCGAGGACAGCAAAGTCTTGTCACATGGGTCAGTTTACCTTCTTAA 219 0.4612 APDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWVSLPS 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme88236g00001 72 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 68 - -
Trme88236g00001 72 Gene3D Transferase(Phosphotransferase) domain 1 2 71 - -
Trme88236g00001 72 ProSiteProfiles Protein kinase domain profile. 1 72 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme88236g00001 72 Pfam Protein kinase domain 10 57 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme88236g00001 72 SUPERFAMILY Protein kinase-like (PK-like) 8 68 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme88236g00001 Trme-Chr88236 55 558 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme88236g00001 1 67 Receptor kinase-like Gene Family AT4G02010 71.642 7.24e-27 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Trme88236g00001 Pkinase 2.1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme88236g00001 K13436 - mof:131150424 140.584