Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme88231g00001 ATGTGCAGGAAAACTTGTCAAACTGGTTTGATCATGGGCTATGAGAATGGTAATAAAGAAGGGAAGCATTGCGAGATTTCTTCTTTGCTTGAATTTTCAGCTGAAGATGATGTGATTGGTTTCAAAGATGNNNNNNNNNNANNNNNNNNNNACGTTGATGAGGTTGGTCTGTGGTATGGAAGGAGTGTTTGTTCGAAAAAATTAGGTTATGAAGAGAGGACTCCTCTTATGGTTGCTGCTATGTTTGGAAGTTTGGATGTATCGGCTTATATTCTTGGAACAGGCCGCGTTGATGTTAATCGGTCTTGTGGATCCGATGGTGCTACTGCTCTTCATTGTGCTGTTGCTGGTGGTTCTGCTGCTTCCGCTGAGATTATCAAGCTTTTGCTTGATGCATCTGCGGATCCTAGTGTTGTAGATGCCAACGGTAACCGACCGGTTGACTTGATTGTTTCTGGGGCCAATTCTATCTTCAATCCGAGGAAGAGGATGCTGCTAGCTCTTTTGGAGGGTACGGTTGGTGGTGCTGATCAGACAT 538 0.4275 MCRKTCQTGLIMGYENGNKEGKHCEISSLLEFSAEDDVIGFKDXXXXXXXXVDEVGLWYGRSVCSKKLGYEERTPLMVAAMFGSLDVSAYILGTGRVDVNRSCGSDGATALHCAVAGGSAASAEIIKLLLDASADPSVVDANGNRPVDLIVSGANSIFNPRKRMLLALLEGTVGGADQT 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme88231g00001 179 PANTHER UNKEMPT FAMILY MEMBER 31 139 IPR045234 -
Trme88231g00001 179 Gene3D - 52 162 IPR036770 -
Trme88231g00001 179 ProSiteProfiles Ankyrin repeat profile. 106 141 IPR002110 GO:0005515
Trme88231g00001 179 ProSiteProfiles Ankyrin repeat region circular profile. 106 140 - -
Trme88231g00001 179 SMART ANK_2a 71 101 IPR002110 GO:0005515
Trme88231g00001 179 SMART ANK_2a 106 138 IPR002110 GO:0005515
Trme88231g00001 179 SUPERFAMILY Ankyrin repeat 68 155 IPR036770 -
Trme88231g00001 179 Pfam Ankyrin repeats (3 copies) 69 139 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme88231g00001 Trme-Chr88231 200 737 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme88231g00001 16 151 C2H2 Transcription Factor Family AT5G12850 46.324 3.95e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme88231g00001 - - aprc:113846970 239.965