Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8819g00001 ATGCAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGCCGTTTGAGGAAAAAGGCCTATGTGCAGCAGTTAGAATCAAGTCGTTTGAAGTTGGTGCAGTTGGAGCAAGAGCTTGAACGCGTAAGACAGCAGGGAATGTATACGGGTGGTGGATTGGATTCTAATAATATGTGTTTTGCTGGACCTATGAATTCAGGAATTGCAGCCTTTGAGATGGAGTATGGACATTGGGTTGATGAGCAAAACAGGCAAATCTCGGAAATGAGAAATGCTTTAAACTCGCATATTAGTGACATAGAGCTCAGGATTCTGGTTGATGGTATGATGAATCACTATGCTGAAATCTATCGGATGAAGTCTGCGGCTGCAAAAGCAGATGTTTTTTATGTTATGTCCGGCATGTGGAAAACAACAGCTGAACGGTTTTTCTTGTGGATCGGTGGTTTTCGTCCCTCTGAGCTTCTCAAGATTCTTGGTCCAATGATTGAACCCTTGACAGAGCAGCAACGATTGGATATTGATAACCTCAGACAATCATGTCAACAAGCCGAAGATGCTCTTTCACAAGGCATGGAAAAACTCCGGCAAACACTCGCTGATAGTGTAGCAGCTGGACAATTCATCGAAGGAACTTATATTCCGCAGATGGCCACTGCAATGGAGAAGTTAGAAGCTCTTGTGTGCTTTGTGAATCAGGCTGACCATCTTCGGCAAGAAACCTTGCAGCAAATGTCGCGAATACTTACAATCCGTCAGTCAGCTCGATGCTTACTTGCTTTAGGGGAATATTTCCAACGCCTGAGGGCTTTNNNNTNNNNNNNNNNTNNNNNNNNNNGTGAACCTGCTTTGAGCTCACTATGA 873 0.4307 MQIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLVQLEQELERVRQQGMYTGGGLDSNNMCFAGPMNSGIAAFEMEYGHWVDEQNRQISEMRNALNSHISDIELRILVDGMMNHYAEIYRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKILGPMIEPLTEQQRLDIDNLRQSCQQAEDALSQGMEKLRQTLADSVAAGQFIEGTYIPQMATAMEKLEALVCFVNQADHLRQETLQQMSRILTIRQSARCLLALGEYFQRLRAXXXXXXXXXXEPALSSL 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8819g00001 290 FunFam BZIP family transcription factor 1 50 - -
Trme8819g00001 290 SUPERFAMILY Leucine zipper domain 4 44 IPR046347 GO:0003700|GO:0006355
Trme8819g00001 290 Gene3D - 2 51 - -
Trme8819g00001 290 PANTHER TRANSCRIPTION FACTOR TGA9 3 274 - -
Trme8819g00001 290 Pfam bZIP transcription factor 4 40 IPR004827 GO:0003700|GO:0006355
Trme8819g00001 290 Coils Coil 170 197 - -
Trme8819g00001 290 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 1 44 IPR004827 GO:0003700|GO:0006355
Trme8819g00001 290 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 5 20 IPR004827 GO:0003700|GO:0006355
Trme8819g00001 290 ProSiteProfiles DOG1 domain profile. 71 281 IPR025422 GO:0006351|GO:0043565
Trme8819g00001 290 SMART brlzneu 1 62 IPR004827 GO:0003700|GO:0006355
Trme8819g00001 290 Pfam Seed dormancy control 88 162 IPR025422 GO:0006351|GO:0043565
Trme8819g00001 290 Coils Coil 82 102 - -
Trme8819g00001 290 Coils Coil 21 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8819g00001 Trme-Chr8819 99 1605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8819g00001 2 286 Calmodulin-binding Proteins AT5G10030 73.684 3.12e-155 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trme8819g00001 DOG1 6.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8819g00001 K14431 - gmx:100793353 469.929