Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme88192g00001 AATGGTTTGTTCCAGATTTGTGATGGTAGAAGAGAAATAGACATCAGGAATAGAAAGAAGGATTCAGATGAAGATGATCAGCAATTTACTGAACAGGAATTGGATGAAGTTCAACGAATGAGGAACACTCCAGATTTCTTCACTAAACTTGTTGAGAGTGTTGCTCCAACTATTTTTGGTCATCAAGATATAAAGCGAGCAATCCTTCTTATGCTTATGAGTGGGGTCCACAAATCTACTCATGAAGGCATCAGCCTTAGAGGAGACATAAATGTTTGTATTGTTGGAGATCCTAGCTGTGCAAAGTCTCAATTTCTTAAATATACTTCAAGCATTGTTCCAAGATCTGTGTATACATCTGGGAAATCATCATCTGCTGCTGGATTGACTGCAACTGTTGCCAAGGAACCAGAAACTGGGGAGTTTTGTATAGAGGTCAATAATTTGTCGCTCTTTTGTACTTATTAG 468 0.3825 NGLFQICDGRREIDIRNRKKDSDEDDQQFTEQELDEVQRMRNTPDFFTKLVESVAPTIFGHQDIKRAILLMLMSGVHKSTHEGISLRGDINVCIVGDPSCAKSQFLKYTSSIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEVNNLSLFCTY 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme88192g00001 155 SMART mcm 3 154 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trme88192g00001 155 Pfam MCM P-loop domain 34 146 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme88192g00001 155 Gene3D - 24 152 IPR027417 -
Trme88192g00001 155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 133 IPR027417 -
Trme88192g00001 155 ProSiteProfiles MCM family domain profile. 46 151 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme88192g00001 155 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 19 145 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme88192g00001 Trme-Chr88192 1 732 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme88192g00001 5 151 Core DNA Replication Machinery Family AT5G44635 80.405 2.78e-81 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme88192g00001 K02542 - mnt:112091254 263.848