Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme88187g00001 ATGCTTGTGTATGAGTATTTGGAAAATGGTTCTTTAGCGGAACATATAAAGTCTAGTAGATTGAATTGGGGAAAAAGGTTTGAAATAGCTTTAGGTACCGCGAAAGGTTTGGCTTATATTCACGAGGAGTGTTTGGAGTGGATTTTGCATTGCGATGTGAAGCCGCATAACATACTTTTGGATTCCAACTACCAACCAAAGGTGGCAGATTTTGGTTTGTCGAAACTGAGAAATAGGAATGATCCTAAATTCTCTAGTTTTTCGAAGATACGAGGAACAAGAGGTTACATGGCACCTGAGTGGATTTTGAATCATTCTATAACATCTAAAGTTGATGTTTATAGCTACGGAATAGTTGTGTTGGAAATGATAACCGGAAAGAGTGCAACAAAAGATGTTGATGTGGGAAATGGACAAGAGAAACAAGGTTTGGTTATATGGTTGAGAGAGAAAAGAAATGAAAGTATTTCATGGGTTAAGGAAATTATGGATCCCAACATAGTAGAAGGTTGTGATGAAAATGAAGTTGAAGCTTTGGCTGAAGTGGCTTTACAATGTGT 560 0.3732 MLVYEYLENGSLAEHIKSSRLNWGKRFEIALGTAKGLAYIHEECLEWILHCDVKPHNILLDSNYQPKVADFGLSKLRNRNDPKFSSFSKIRGTRGYMAPEWILNHSITSKVDVYSYGIVVLEMITGKSATKDVDVGNGQEKQGLVIWLREKRNESISWVKEIMDPNIVEGCDENEVEALAEVALQCV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme88187g00001 187 FunFam Putative receptor-like protein kinase 7 187 - -
Trme88187g00001 187 Pfam Protein kinase domain 2 162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme88187g00001 187 Gene3D Transferase(Phosphotransferase) domain 1 7 187 - -
Trme88187g00001 187 SUPERFAMILY Protein kinase-like (PK-like) 1 136 IPR011009 -
Trme88187g00001 187 PANTHER OS07G0415500 PROTEIN 1 187 - -
Trme88187g00001 187 ProSiteProfiles Protein kinase domain profile. 1 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme88187g00001 187 ProSitePatterns Serine/Threonine protein kinases active-site signature. 48 60 IPR008271 GO:0004672|GO:0006468
Trme88187g00001 187 SMART serkin_6 2 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme88187g00001 Trme-Chr88187 1 560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme88187g00001 1 187 Receptor kinase-like Gene Family AT5G45780 38.860 9.51e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme88187g00001 Pkinase 7.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme88187g00001 - - tpra:123913336 353.214