Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme88161g00001 ATGGAACAGATCGGTCGCGGTGCATTTGGTGCTGCAATTCTTGTTAATCACAAAGTGGAGAAGAAGAGATATGTGTTGAAGAAAATTAGGCTTGCGCGGCAAACGGAACGGTGTAGAAGATCTGCACATCAAGAGATGGCTCTTATTGCTCGAATTAAGCATCCTTACATTGTTGAATTCAAGGAAGCTTGGGTTGAGAAG 201 0.4328 MEQIGRGAFGAAILVNHKVEKKRYVLKKIRLARQTERCRRSAHQEMALIARIKHPYIVEFKEAWVEK 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme88161g00001 67 ProSiteProfiles Protein kinase domain profile. 1 67 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme88161g00001 67 Pfam Protein kinase domain 2 66 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme88161g00001 67 SUPERFAMILY Protein kinase-like (PK-like) 2 67 IPR011009 -
Trme88161g00001 67 ProSitePatterns Protein kinases ATP-binding region signature. 4 27 IPR017441 GO:0005524
Trme88161g00001 67 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 67 - -
Trme88161g00001 67 Gene3D Phosphorylase Kinase; domain 1 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme88161g00001 Trme-Chr88161 320 716 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme88161g00001 2 67 Core Cell Cycle Gene Families AT1G73690 30.303 6.12e-07 42.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Trme88161g00001 Pkinase 4.6e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme88161g00001 K08857 - psat:127119140 133.65