Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme88160g00001 CTTGGCATGGCCCCTGTTTACATGGCATTCCTTCGTTTTATGGGCGATGAAAATGATGCTCGGAACTACAGCTATAGCCTGGAAGTTGGGGCCAATGGAAGAAAACTAATTTGGGAGGGTACGCCTCGAAGTGTTCGGGATAGCCACCGTAAAGTCAGGGATAGCCATGATGGTCTCATCATTCAAAGAAATATGGCACTATTTTTCTCTGGTGGGGATAGGAAGGAGCTGAAACTTAGAGTCACAGGAAGAATTTGGAAGGAACAGAATCAAGAAAATGGAGTGTGCATACCTAATATTTGTAGCTGA 309 0.4466 LGMAPVYMAFLRFMGDENDARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNQENGVCIPNICS 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme88160g00001 102 Pfam Seven in absentia protein family 3 82 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trme88160g00001 102 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 3 88 - -
Trme88160g00001 102 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1 82 IPR008974 GO:0005515
Trme88160g00001 102 SUPERFAMILY TRAF domain-like 4 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme88160g00001 Trme-Chr88160 55 363 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme88160g00001 1 89 C3H Transcription Factor Family AT2G41980 79.775 3.51e-50 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme88160g00001 K04506 - psom:113323087 204.912