Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8813g00001 ATGCCTATTTTGGAAAACAGTNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTTCTGATGAAAGTGAAACCATTAGGGATCACAAGAAATTGAAAAGATCAACTATAACTATCCCTATTTTGTTTGCAAATATCAGCAACCATAACTCAACCAGCATCAATACTTTCTTCAAAAACAGTATCAAAAGTAGTGTGAATAGCATACCAAGGCTTCATTTCAGAGATCATATAAGAACTTATAAGCAAAGATATTTTGCTGCTGAAGCTGTTGAAGAAGCAGCTGAAGAACATTTCAATTATAATAATTCTGAAGCTGAAGAAGAAGATGGAACATGTGCTGATGGAATGAGATTAGTTCAACTTTTGATTGCTTGTGCTGAAGCTGTTNNNNNNNNNNTNNNNNNNNNNGCTTCGGTTTTATTATCTGAACTTAAATCAAATGCTTTGGTGTTTGGATCATCATTCCAAAGAGTTGCTTCTTGTTTTGTTCAAGGGTTAACAGAGAGACTAACTCTGATTCAACCAATTGGGAATAATTCTGTTGGATCAGATACAAAATCAATGATGAACATAATGGATGCTGCATCAGAAGAAATGGAAGAAGCATTCAAATTGGTTTATGAGATATGTCCACATCTTCAATTTGGACATTTTGTGGCAAATTCCATAATATTGGAAGCCTTTGAGGGTGAGAGTTTTGTTCATGTGGTTGACTTAGGCATGAGTCTAGGTCTACCACATGGACACCAATGGCGAGGACTAATTCAAAGTCTCGCGAATCGATCTGGTAGTCAACGTGTTCTTCGTCGGCTTAGGATCACAGCGGTTGGTCTATGCATTGCTAGAATCCAAGTCATTGGTAAAGAACTCTCAATTTACGCGAAAAATTTAGGGGTTCATTTGGAATTCTCAATTGTTGAGAAGAATTTAGAGAATTTGAAACCTGAAGACATAAAAGTGAATGAAAAAGAGGTTCTTGTGGTTAACAGCATTCTTCAATTGCATTGTGTTGTTAAAGAGAGTCGCGGCGCTTTGAATTCAGTTTTACAAATGGTACATGGTCTTTCGCCGAAAGTTTTGGTGATGGTTGAACAAGATTCAGGTCACAATGGACCTTTCTTTCTTGGAAGGTTTATGGAATCATTGCATTACTATTCTGCTATTTTTGACTCATTAGATGCTATGCTACCAAAGTATGATACTAAGAGAGCAAAAATTGAACAGTTTTATTTTGCTGAGGAGATAAAGAACATTGTGAGCTGTGAAGGACCATTGAGGATGGAAAGGCATGAGAAAGTTGATCAATGGAGGAGGAGAATGAGTAGGGCTGGTTTTCAAGGCGCGCCGATTAAGATGGTGGTTCAAGCTAAGCAGTGGCTTTTGAAGAATAAGATTTGTGATGGATATACTGTTGTGGAAGAGAAAGGATGCTTAGTTCTTGGATGGAAATCAAAGCCAATTGTTGCAGTTTCTTGCTGGAAATGCTGA 1485 0.3616 MPILENSXXXXXXXXXXSDESETIRDHKKLKRSTITIPILFANISNHNSTSINTFFKNSIKSSVNSIPRLHFRDHIRTYKQRYFAAEAVEEAAEEHFNYNNSEAEEEDGTCADGMRLVQLLIACAEAVXXXXXXXASVLLSELKSNALVFGSSFQRVASCFVQGLTERLTLIQPIGNNSVGSDTKSMMNIMDAASEEMEEAFKLVYEICPHLQFGHFVANSIILEAFEGESFVHVVDLGMSLGLPHGHQWRGLIQSLANRSGSQRVLRRLRITAVGLCIARIQVIGKELSIYAKNLGVHLEFSIVEKNLENLKPEDIKVNEKEVLVVNSILQLHCVVKESRGALNSVLQMVHGLSPKVLVMVEQDSGHNGPFFLGRFMESLHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPLRMERHEKVDQWRRRMSRAGFQGAPIKMVVQAKQWLLKNKICDGYTVVEEKGCLVLGWKSKPIVAVSCWKC 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8813g00001 494 ProSiteProfiles GRAS family profile. 108 493 IPR005202 -
Trme8813g00001 494 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 93 488 IPR005202 -
Trme8813g00001 494 Pfam GRAS domain family 117 493 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8813g00001 Trme-Chr8813 37 1521 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8813g00001 114 493 GRAS Transcription Factor Family AT1G66350 37.240 1.07e-76 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme8813g00001 GRAS 1.3e-108 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8813g00001 - - gmx:100813548 712.99