Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme88133g00001 ATGCCTCGTAAAGTTAACTATGGAATTGATTACTACGACGATGACTATGAGGACTATGATGATGACTATGACTATGATGTTGACACTGATAATAATTATGGAGCAGGAGAAGGGCCTGATACAAAGCAAGAGACCATCAAGCCTGGAGTTTGGGGATGCTCCATTTGTACTTATGACAACGATGAGAGTATGACTTCGTGTGATATATGTGGCGTTATGCGTCATCCCGTGGTTAACAATGGAACTTCCAACAGTAACAAAACAGGTAAT 270 0.4074 MPRKVNYGIDYYDDDYEDYDDDYDYDVDTDNNYGAGEGPDTKQETIKPGVWGCSICTYDNDESMTSCDICGVMRHPVVNNGTSNSNKTGN 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme88133g00001 90 Gene3D - 42 88 - -
Trme88133g00001 90 MobiDBLite consensus disorder prediction 1 42 - -
Trme88133g00001 90 SUPERFAMILY Ran binding protein zinc finger-like 48 74 IPR036443 -
Trme88133g00001 90 ProSiteProfiles Zinc finger RanBP2 type profile. 47 76 IPR001876 -
Trme88133g00001 90 ProSitePatterns Zinc finger RanBP2-type signature. 51 70 IPR001876 -
Trme88133g00001 90 MobiDBLite consensus disorder prediction 12 28 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme88133g00001 49 86 Eukaryotic Initiation Factors Gene Family AT5G10630 63.158 1.56e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme88133g00001 K14416 - gmx:100798594 95.1301