Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme88130g00001 ATGATGTCGATGATCATGGGAAACGACAACAACAGAAGAAACCTGAAGAAACCTTATTTGTGTCGTGTTTGCAACATGGATTTTTCATCAAACAAAGCTTTGAATGGACATATGAGATGGCACAAGAAGGGTTCTGCATCTTCATTGTTGGAACAGAACAAGAGTAGTTATGATGATCAAGATCAGTTACCAGCTATTGACTTGTCAAG 209 0.3828 MMSMIMGNDNNRRNLKKPYLCRVCNMDFSSNKALNGHMRWHKKGSASSLLEQNKSSYDDQDQLPAIDLS 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme88130g00001 69 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
Trme88130g00001 69 MobiDBLite consensus disorder prediction 43 69 - -
Trme88130g00001 69 Gene3D Classic Zinc Finger 2 66 - -
Trme88130g00001 69 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
Trme88130g00001 69 SUPERFAMILY beta-beta-alpha zinc fingers 16 43 IPR036236 -
Trme88130g00001 69 FunFam B-cell CLL/lymphoma 6, member B 16 42 - -
Trme88130g00001 69 MobiDBLite consensus disorder prediction 46 62 - -
Trme88130g00001 69 Pfam C2H2-type zinc finger 19 43 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme88130g00001 17 63 C2H2 Transcription Factor Family AT3G53820 38.298 6.71e-06 39.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme88130g00001 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme88130g00001 K26583 - vvo:131636698 44.2838