Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme88120g00001 ATGATTAGTGTTAAGTACAAAGGCCAGGAGAAGCTTCTTTGTCCTGAGGAAATTTCATCTATTGTCCTGACAAATATGAAAGACATTGCAGAGGCATATTTGGAATCACCGGTTAAAAATGCAGTTGTTACTGTTCCAGCTTATTTCAACGATTCTCAGCGAAAAGCCACCATGGATGCTGGTGCCATTGCTGGCCTTAATGTTATGCGAATTATTAATGAACCCACTGCTGCCGCCATTGCATATGGCCTTGATAAGAGAGCTAACTGTGAAGGTGAAAGGAATATTTTTGTGTTTGATCTTGGTGGTGGAACTTTTGATGTGTCTCTCCTCACAATTAAAGGTGATGTCTTTGAAGTTAAAGCTACTGCTGGAAACACTCATATTGGAGGAGAGGACTTTGACAATAGAATGTTGAACTACTTTGTCGAGGAATTTAAGAGGAAGAACAAAGTGGATATCACTAGGAATCCAAGAGCCTTGAGAAGGTTGAAAACTGCATGTGAAAAGGCAAAAAGGACACTCACTTTCAAATCTCTCACCTCTATTGAGATAGATAATTTATTTGAGGGCATTGACTTCTCTTCATCAATCACTCGTGTCAAATTTGAGGAAATTAATATGGATCTTTTTAATGAGT 640 0.3859 MISVKYKGQEKLLCPEEISSIVLTNMKDIAEAYLESPVKNAVVTVPAYFNDSQRKATMDAGAIAGLNVMRIINEPTAAAIAYGLDKRANCEGERNIFVFDLGGGTFDVSLLTIKGDVFEVKATAGNTHIGGEDFDNRMLNYFVEEFKRKNKVDITRNPRALRRLKTACEKAKRTLTFKSLTSIEIDNLFEGIDFSSSITRVKFEEINMDLFNE 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme88120g00001 213 SUPERFAMILY Actin-like ATPase domain 2 86 IPR043129 -
Trme88120g00001 213 PANTHER HEAT SHOCK PROTEIN 70KDA 2 212 IPR013126 GO:0005524|GO:0140662
Trme88120g00001 213 PRINTS 70kDa heat shock protein signature 104 114 - -
Trme88120g00001 213 PRINTS 70kDa heat shock protein signature 41 61 - -
Trme88120g00001 213 Gene3D Actin; Chain A, domain 4 131 212 - -
Trme88120g00001 213 Pfam Hsp70 protein 2 212 IPR013126 GO:0005524|GO:0140662
Trme88120g00001 213 SUPERFAMILY Actin-like ATPase domain 93 212 IPR043129 -
Trme88120g00001 213 Gene3D - 87 130 - -
Trme88120g00001 213 FunFam Endoplasmic reticulum chaperone BiP 6 97 - -
Trme88120g00001 213 ProSitePatterns Heat shock hsp70 proteins family signature 2. 98 111 IPR018181 -
Trme88120g00001 213 Gene3D - 2 21 - -
Trme88120g00001 213 Gene3D - 22 86 - -
Trme88120g00001 213 FunFam Heat shock 70 kDa 130 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme88120g00001 Trme-Chr88120 37 676 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme88120g00001 1 211 Calmodulin-binding Proteins AT3G12580 74.882 1.24e-112 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme88120g00001 K03283 - vvo:131625172 346.665