Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme88119g00001 CCAACACAGCAAAACACCAACAAAGAATGCGAGCAAGTTGTCATTCATTGTGATCTAAAGCCAAGCAATGTCCTTGATGATGACTTCGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTTTCGGTCATTGGTGATACCTCTCATAAAGATACTAGTACAATTGGAATAAAAGGGACTGTTGGTTATGTTCCACCTGAGTATGGATTGGGTTCAGAAGTGTCCACATTTGGTGACATGTATAGCTTTGGAATCCTTATGTTGGAAATTCTTACCGGTAGAAGACCTACTGACGAAGCTTCTAGAGTTGGTCAAAGTCTGCATAACTTTGTTGCAAATTCATTTCCTGATAATCTTATAATGATTTTGGACCCACATCTTTTGTCAAGAGATGAAGAAGTAGCAATGGAAGATCGAAATCGTGGGAATCTTATTCCAACTGTAGAGGAGTGCTTAATTTCGCTTTTTAGGATTGGACTTATTTGTTCAATGGAATCACCGAAAGAAAGAATGAATATTGTGGAT 528 0.3845 PTQQNTNKECEQVVIHCDLKPSNVLDDDFVAHVSDFGIARLVSVIGDTSHKDTSTIGIKGTVGYVPPEYGLGSEVSTFGDMYSFGILMLEILTGRRPTDEASRVGQSLHNFVANSFPDNLIMILDPHLLSRDEEVAMEDRNRGNLIPTVEECLISLFRIGLICSMESPKERMNIVD 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme88119g00001 176 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 10 174 - -
Trme88119g00001 176 ProSiteProfiles Protein kinase domain profile. 1 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme88119g00001 176 Gene3D Transferase(Phosphotransferase) domain 1 5 176 - -
Trme88119g00001 176 Pfam Protein kinase domain 12 104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme88119g00001 176 SUPERFAMILY Protein kinase-like (PK-like) 14 174 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme88119g00001 Trme-Chr88119 1 651 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme88119g00001 10 172 Receptor kinase-like Gene Family AT3G47570 43.636 1.08e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trme88119g00001 Pkinase 3.7e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme88119g00001 - - mtr:11411980 257.684