Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme87g00003 AAGGAAACAAGAATGGCAATATATTCCAAGTTCTGTGAGAAGCAGCGCTCGGTTCTCTTTTCAACTGATGTGGCTGCAAGAGGCCTTGATTTGTATAAGGCAGTCGACTGGGTTGTTCAGGTAGATTGTCCTGAGAATATAGCATCTTACATACATCGAACTGGCCGTACTGCTCGTTATAAATACAATGGAAACTCAGTTTTATTTCTATTGCCTTCAGAAACTCGGATGCTTGACAACTTAATAGCAGCAAATGTTCCAGTGCAGTTAGCCAAGCCAAGGAAAGAACTACTGCAACCAGTGTCCAGTTTGTTGGCATCTTTACTGGCCAATTACCCAAAACTACAGTCGCGGGCCCGATGGGCATTTGTCACATACATGAGGTCCATCCATCTCCAAAAGGATAAACAGATCTTTGATGTTGAGAAACTTCCTATTGGTGCGTATTTAACATCATTAGGTCTGGCAATGACCCCGGACATCAGTTTTCTAAAGCAGATTATTACAGGTAAAGCTGTGTCAATTAGAGTTGAACCAGAGGATCCAAACAAGGAAAATGTCGTAGAAGGTTCAACAGAAAAGCTAGACACAGTTGTTTTCAAAGATGAGGAAACTGAAAACGATCTTCTTCATGCGGCTGATACTTCAAACGAAGGCAACGTCAAGTCAGTCAGCTGA 678 0.4218 KETRMAIYSKFCEKQRSVLFSTDVAARGLDLYKAVDWVVQVDCPENIASYIHRTGRTARYKYNGNSVLFLLPSETRMLDNLIAANVPVQLAKPRKELLQPVSSLLASLLANYPKLQSRARWAFVTYMRSIHLQKDKQIFDVEKLPIGAYLTSLGLAMTPDISFLKQIITGKAVSIRVEPEDPNKENVVEGSTEKLDTVVFKDEETENDLLHAADTSNEGNVKSVS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme87g00003 225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 90 IPR027417 -
Trme87g00003 225 SMART helicmild6 1 61 IPR001650 -
Trme87g00003 225 MobiDBLite consensus disorder prediction 206 225 - -
Trme87g00003 225 Gene3D - 1 160 IPR027417 -
Trme87g00003 225 PANTHER RNA HELICASE 2 116 - -
Trme87g00003 225 CDD SF2_C_DEAD 2 70 - -
Trme87g00003 225 Pfam Domain of unknown function (DUF4217) 104 161 IPR025313 -
Trme87g00003 225 Pfam Helicase conserved C-terminal domain 2 60 IPR001650 -
Trme87g00003 225 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 109 IPR001650 -
Trme87g00003 225 SMART DUF4217_3 100 163 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme87g00003 Trme-Chr87 5326 6361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme87g00003 1 70 Eukaryotic Initiation Factors Gene Family AT5G11170 32.857 1.39e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme87g00003 K14776 - gmx:100792106 309.301