Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme87972g00001 TTTGCAGGTGATGTTTCAAAGAAGGCCGATCCAAAGGCACAGGCCTTGAAAGCTGCTAAGGCAGTGAAGTCGGGCACTGCCATTAAGAAGAAGGCAAAGAAGATCAGGACAACTGTTACATTCCATAGGCCAAAGACTTTGTCAAAGGAGAGGAACCCCAGATACCCTCGCATCAGTGCTACACCAAGGAACAAGCTTGATCATTATCAGATTCTGAAATATCCTCTCACCACCGAGTCTGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTGAGAGCTGACAAAAAGAAGATCAAGGATGCAGTGAAGAAAATGTACGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGGTGA 375 0.44 FAGDVSKKADPKAQALKAAKAVKSGTAIKKKAKKIRTTVTFHRPKTLSKERNPRYPRISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIR 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme87972g00001 124 Gene3D - 32 124 IPR012677 -
Trme87972g00001 124 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 68 124 IPR012678 GO:0003735|GO:0005840|GO:0006412
Trme87972g00001 124 PANTHER 60S RIBOSOMAL PROTEIN L23A 7 124 IPR013025 GO:0003735|GO:0005840|GO:0006412
Trme87972g00001 124 Pfam Ribosomal protein L23, N-terminal domain 12 60 IPR005633 -
Trme87972g00001 124 FunFam 50S ribosomal protein L23 68 124 - -
Trme87972g00001 124 Pfam Ribosomal protein L23 71 123 IPR013025 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme87972g00001 Trme-Chr87972 2 376 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme87972g00001 24 124 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 88.119 3.41e-48 150