Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme87956g00001 ATGTCGCATTTGCTTGCGAAAGTTGGTGCAGGAGATTCCGAACCGCACCCTTTCATCGACGAATTTATCACTACAATAGAAGAGGATGGTGGTATTTGTTATACTCATCCTCAACATTTACCAGGTATTTCACAAGATGGAAGTGTTGCGCATTTTTTTCACAAAGCAATTAAGGCTTATAATTCCGGCGGTCGAAAGCGTCGAAGAATATTTGACCAAAATATCGGCGATCTTCGTTGGCACAAGACCGGAAAGACTAGGCCTATCTTCTTGGACGGGATCCAAAGAGGCTGTAAGAAAATTATGGTTCTCTATACGACACCGTCAAATGGAGGAAAAGCTGAGAAGACTAACTGGGTTGTGCATCAATACCACATCGGAAGAGAAGAGGACGAAAAGGATGGAGAGTATGTCATCTCAAAAATATTTTACCAGCAGCAACAAGTGAAATTAGGTAAAAAAGATGATCAAGATGTTCCTGAAACCAGTGGTGAAGCAAGTGTTGCAAGAGTTGTTGATCCAGTTACTCCTAATTTTGTGACTCCTGAACTTCCTTGTAACAAAAAACAATGCTCA 576 0.4115 MSHLLAKVGAGDSEPHPFIDEFITTIEEDGGICYTHPQHLPGISQDGSVAHFFHKAIKAYNSGGRKRRRIFDQNIGDLRWHKTGKTRPIFLDGIQRGCKKIMVLYTTPSNGGKAEKTNWVVHQYHIGREEDEKDGEYVISKIFYQQQQVKLGKKDDQDVPETSGEASVARVVDPVTPNFVTPELPCNKKQCS 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme87956g00001 192 Gene3D NAC domain 1 150 IPR036093 GO:0003677|GO:0006355
Trme87956g00001 192 ProSiteProfiles NAC domain profile. 1 145 IPR003441 GO:0003677|GO:0006355
Trme87956g00001 192 FunFam NAC domain-containing protein 8 1 149 - -
Trme87956g00001 192 SUPERFAMILY NAC domain 17 145 IPR036093 GO:0003677|GO:0006355
Trme87956g00001 192 Pfam No apical meristem (NAM) protein 4 126 IPR003441 GO:0003677|GO:0006355
Trme87956g00001 192 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 190 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme87956g00001 Trme-Chr87956 72 738 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme87956g00001 1 152 NAC Transcription Factor Family AT1G28470 56.209 3.62e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme87956g00001 NAM 3.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme87956g00001 - - gmx:100799488 303.138