Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme87940g00001 GGCATCAGTGGTGTTGAAGGAATGCAGGCAGTTATGTCAAGTGATATTGCAATCGCTCAATTTCGGTATCTAGAGCGTTTACTTCTTGTGCATGGACATTGGTGTTACAGAAGAATCACATCAATGATCTGTTACTTCTTTTACAAGAATATTGCCTTTGGCGTCACTCTATTCCTGTATGAAATTTATGCCTCATTCTCGGGGCAAGTTGCATACAATGATTGGTTCCTGTCACTATATAATGTATTCTTCACTTCCCTTCCTGTAATTGCTTTGGGAGTATTTGACCAAGATGTCTCTGCTAGATTATGTCTCGAGGTATCTCTTTAA 330 0.3939 GISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRITSMICYFFYKNIAFGVTLFLYEIYASFSGQVAYNDWFLSLYNVFFTSLPVIALGVFDQDVSARLCLEVSL 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme87940g00001 109 SUPERFAMILY Calcium ATPase, transmembrane domain M 32 103 IPR023298 -
Trme87940g00001 109 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 106 - -
Trme87940g00001 109 Pfam Phospholipid-translocating P-type ATPase C-terminal 11 107 IPR032630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme87940g00001 Trme-Chr87940 3 603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme87940g00001 1 109 Primary Pumps ATPases AT1G68710 86.239 7.99e-63 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme87940g00001 K01530 - gmx:100797039 208.764