Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8788g00001 ATGCTTTCTGATCCAGACTACTGTAGAAAGACTCATGGAGAAAATGAGAGCATTTGGAACCTTTCTGATTGTCATGTACTTGGTTGCAAGCTCCATTCCCYTATTAGAGGTGCTTCAAGGGAAAGGCTATTTGAACTTCATGAAATTTTTAAGACAGTACCTTCACCTTGTGGAGAACAGCAGAAGTTTATTATTTCCAAGATAATACCTATGGACCACACTTGCAGATCCGGGATTTGGGAGATCTCTGATGATATTTTAACTAAAATTCTATCTTCCCTGGGCCCGTTGGACCTCCTAAGGGTTTCTGTAACGTGTCATCATCTAAGATCCTTGGCTGCTTCAGTAATACCCTGCACAAAGTTAAAACTATTTCCTCATCAGCAGACAGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTAATCTTTTGCCACATCCTTTATATATAGCTCTTTCAACTTATGATGGCTTTAGTTTCCATGTTAATACTGTATCTGGTGATATAGTCACCGGGGAAGCTCCCACCATCAAAGATTTTCGTGGAGGAATGTTTTGTGACGAACCTGGCTTGGGTAAGACTGTAACAGCTCTTTCTCTTATCACGAAGACACAAGGTACATTGGCTGATCCACCAG 640 0.4141 MLSDPDYCRKTHGENESIWNLSDCHVLGCKLHSXIRGASRERLFELHEIFKTVPSPCGEQQKFIISKIIPMDHTCRSGIWEISDDILTKILSSLGPLDLLRVSVTCHHLRSLAASVIPCTKLKLFPHQQTAVEWMLHRERNANLLPHPLYIALSTYDGFSFHVNTVSGDIVTGEAPTIKDFRGGMFCDEPGLGKTVTALSLITKTQGTLADPP 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8788g00001 213 SUPERFAMILY F-box domain 74 115 IPR036047 GO:0005515
Trme8788g00001 213 CDD F-box_SF 81 113 - -
Trme8788g00001 213 SMART fbox_2 82 122 IPR001810 GO:0005515
Trme8788g00001 213 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 102 206 - -
Trme8788g00001 213 Pfam F-box domain 82 116 IPR001810 GO:0005515
Trme8788g00001 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 204 IPR027417 -
Trme8788g00001 213 Pfam SNF2-related domain 127 204 IPR000330 GO:0005524|GO:0140658
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8788g00001 121 203 RAD5 or RAD16-like Gene Family AT5G05130 38.554 2.02e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme8788g00001 SNF2_N 3.5e-25 CL0023