Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8780g00001 ATGGAAACTGTCAAAAAGCCACCTGAGCCTCCAAAGGAACCTGTCTTCAGCTGTCCTATATGCATGGGCCCTTTGGTCGAAGAAATGTCGACAAGGTGTGGTCATATATTTTGCAAGGCTTGTATCAAGGCTGCTATAAGTGCTCAGGCTAAATGTCCTACCTGTAGAAAAAAGATTACTGTGAAAGAGCTTATAAGGGTGTTTCTCCCAACAACTAAATAA 222 0.4234 METVKKPPEPPKEPVFSCPICMGPLVEEMSTRCGHIFCKACIKAAISAQAKCPTCRKKITVKELIRVFLPTTK 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8780g00001 73 ProSitePatterns Zinc finger RING-type signature. 33 42 IPR017907 -
Trme8780g00001 73 PANTHER ELFLESS, ISOFORM B 5 73 - -
Trme8780g00001 73 Pfam Zinc finger, C3HC4 type (RING finger) 18 55 - -
Trme8780g00001 73 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 72 IPR013083 -
Trme8780g00001 73 SMART ring_2 18 55 IPR001841 -
Trme8780g00001 73 SUPERFAMILY RING/U-box 13 68 - -
Trme8780g00001 73 ProSiteProfiles Zinc finger RING-type profile. 18 56 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8780g00001 10 73 C3H Transcription Factor Family AT3G07200 75.000 4.12e-31 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8780g00001 K22651 - qsa:O6P43_026661 129.413