Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8778g00001 AGTGCCGATGCGGAGGTTACTGGGAGTAAATCATCTTCTGAAGACAAGACAGAGTTTGTACCAATATTTCGGTCGGGAAGTTGTGCTGAAAGAGGACCTAAACAATATATGGAAGATGAACACATATGTATAGATGATCTTATTCATCACATAGGTTCTGCTTCCAATATTCCTTTTCCCGGAGCTTTCTATGGGGTGTTTGATGGTCACGGAGGAACAGACGCGGCTTTGTTTGTAAGAAATAACCTTCTTAGACTCATTGTTGAGGACTCCCAGTTTCCAACTTGTGTGGGGAAGGCAATTACAAGTGCATTTATGAAAGCCGATTATGCATTTGCAGATTCCAGTTCGCTTGATATCTCCTCTGGTACCACTGCTTTAACTGCTCTTGTATTTGGGAGGACCATGATAATTGCAAATGCGGGGGATTGTCGAGCTGTACTGGGGAGACGAGGTAGAGCAATTGAAATGTCAAGAGACCAGAAACCAAATTGCACTTCAGAAAGGCTAAGGATTGAAAAACTTGGTGGTGTGGTATATGATGGATACTTGAATGGCCAATTATCCGTTTCACGTGCCTTAGGAGACTGGCACATGAAGGGTCCCAAGGGTTCTGCCTGCCCTTTGAGTGCCGAGCCAGAGTTGCAGGAAACCTTATTGACTGAGGATGATGAATTCTTGATTATGGGCTGTGATGGCCTATGGGATGTAATGAGTAACCAATGTGCTGTGACCATGGCAAGAAAAGAGTTGATGATACATAATGACCCTCAAAGGTGTTCAAGAGAGTTGGTCAGAGAGGCTCTTAAGCGTAACTCGTGTGATAATTTAACAGTTATT 840 0.4357 SADAEVTGSKSSSEDKTEFVPIFRSGSCAERGPKQYMEDEHICIDDLIHHIGSASNIPFPGAFYGVFDGHGGTDAALFVRNNLLRLIVEDSQFPTCVGKAITSAFMKADYAFADSSSLDISSGTTALTALVFGRTMIIANAGDCRAVLGRRGRAIEMSRDQKPNCTSERLRIEKLGGVVYDGYLNGQLSVSRALGDWHMKGPKGSACPLSAEPELQETLLTEDDEFLIMGCDGLWDVMSNQCAVTMARKELMIHNDPQRCSRELVREALKRNSCDNLTVI 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8778g00001 280 PANTHER PROTEIN PHOSPHATASE 2C 15 280 IPR015655 GO:0004722|GO:0006470
Trme8778g00001 280 FunFam Probable protein phosphatase 2C 22 9 280 - -
Trme8778g00001 280 SUPERFAMILY PP2C-like 19 280 IPR036457 -
Trme8778g00001 280 CDD PP2Cc 23 280 IPR001932 -
Trme8778g00001 280 SMART PP2C_4 14 280 IPR001932 -
Trme8778g00001 280 ProSiteProfiles PPM-type phosphatase domain profile. 24 280 IPR001932 -
Trme8778g00001 280 ProSitePatterns PPM-type phosphatase domain signature. 63 71 IPR000222 GO:0043169
Trme8778g00001 280 Gene3D - 3 280 IPR036457 -
Trme8778g00001 280 Pfam Protein phosphatase 2C 25 276 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8778g00001 Trme-Chr8778 278 1797 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8778g00001 12 280 PP2C-type Phosphatase Gene Family AT2G33700 81.784 1.04e-170 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8778g00001 K14803 - gmx:100778015 509.99