Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme87737g00001 CAAGTTTTGAGAGAAGTTACGGATAATTTTAGCGAAAAGAACATATTGGGGAAGGGAGGTTTTGGCACTGTATACAAAGGAGAATTGGCCGATGGAACGAAGATCGCAGTTAAAAGGATGCAAACTGAAATGGTTGGTGACAAAGGGCTGAATGAGTTCAAATCTGAAATTGCAGTTCTTACTAAGGTTCGACATAGGCATTTGGTCGGACTTCTCGGCTATTGCTTGGAAGACAATGAGAAACTTCTTGTTTATGAATACATGCCTCAGGGGACTCTTAGTCAACATCTGTTTGACTGGAAAGATGATGGGTCAAAACCGCTCGAATGGAAGAGAAGGCTCTCCATTGCCTTAGATGTTGCTAGAGGTGTTGAATATCTTCATGGTTTGGCACATCAAATTTTCATCCACAGGGATCTGAAACCATCAAATATCTTGCTTGGGGATGATATGCGCGCTAAAGTATCCGACTTTGGATTGGTTCGACTTGCTCCAGAAGGACAAGCCTCATTCCAGACTAGAATTGCTGGAACTTTTGGATATCTAGCACCAGAGTATGCAGGTCTCTACTTTAGTGTCAGCTGA 585 0.4256 QVLREVTDNFSEKNILGKGGFGTVYKGELADGTKIAVKRMQTEMVGDKGLNEFKSEIAVLTKVRHRHLVGLLGYCLEDNEKLLVYEYMPQGTLSQHLFDWKDDGSKPLEWKRRLSIALDVARGVEYLHGLAHQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQASFQTRIAGTFGYLAPEYAGLYFSVS 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme87737g00001 194 ProSitePatterns Protein kinases ATP-binding region signature. 16 38 IPR017441 GO:0005524
Trme87737g00001 194 PANTHER OSJNBA0070M12.3 PROTEIN 1 190 - -
Trme87737g00001 194 FunFam receptor-like protein kinase FERONIA 1 87 - -
Trme87737g00001 194 SMART serkin_6 10 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme87737g00001 194 Pfam Protein kinase domain 11 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme87737g00001 194 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Trme87737g00001 194 SUPERFAMILY Protein kinase-like (PK-like) 3 189 IPR011009 -
Trme87737g00001 194 ProSiteProfiles Protein kinase domain profile. 10 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme87737g00001 194 Gene3D Transferase(Phosphotransferase) domain 1 88 190 - -
Trme87737g00001 194 FunFam Os07g0541700 protein 88 178 - -
Trme87737g00001 194 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme87737g00001 Trme-Chr87737 2 664 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme87737g00001 3 187 Trihelix Transcription Factor Family AT1G70460 51.613 6.78e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trme87737g00001 Pkinase 8.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme87737g00001 K00924 - qsa:O6P43_032461 333.954